View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_5 (Length: 399)
Name: NF8858_low_5
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 18588682 - 18589069
Alignment:
| Q |
1 |
acttacttgaatatctgtaatgtctccaatagcgaaaacgttgttccttcccttcactctcaagtattcatcaacttggatccttccatgaccattcaaa |
100 |
Q |
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| T |
18588682 |
acttacttgaatatctgtaatgtctccaatagcgaaaacgttgttccttcccttcactctcaagtattcatcaacttggatccttccatgaccatccaaa |
18588781 |
T |
|
| Q |
101 |
tcatctttcaaaaaagtttcacctagccatgctgtggatagtggtttccctatacatagaaaatgtgtatctgcttctatactctctccaactgaagttt |
200 |
Q |
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| T |
18588782 |
tcatctttcaataaagtttcacctagccatgctgtggatagtggtttccctatacatagaaaatgtgtatctgcttctatactctctccaactgaagttt |
18588881 |
T |
|
| Q |
201 |
gatatgtcctattttcatttgtgaaggaatctaagtcaactgattgttcgaattttacatcaactttccttgatttaagccattttaatgtctttcttga |
300 |
Q |
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| T |
18588882 |
gatatgtcctattttcatttgtgaaggaatctaagtcaactgattgttcgagttttacatcaactttccttgatttaagccattttaatgtctttcttga |
18588981 |
T |
|
| Q |
301 |
agcttttggtccaatatattctagcaatcttgatcctttatgcactattgtaacttttttgtcaggaaaatcaacagcaatctctgct |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18588982 |
agcttttggtccaatatattctagcaatcttgatcctttatgcactattgtaacttttttgtcaggaaaatcaacagcaatctctgct |
18589069 |
T |
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