View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_6 (Length: 392)
Name: NF8858_low_6
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 17269379 - 17269004
Alignment:
| Q |
1 |
ataccttggattttattactaaccaaaacgggtagggccaataaaaattgaagggtttttccatgtaaattacacatattgaagatatatactaaaatcc |
100 |
Q |
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| T |
17269379 |
ataccttggattttattactaaccaaaacgggtagggccaataaaaattgaagggtttttccatgtaaattacacatattgaagatatatactaaaatcc |
17269280 |
T |
|
| Q |
101 |
aaaatttgatgggcacaactatgtttaccatcccacatgttcaaatagtgatagttaggttattatacctaaagaaaatatttcatatatctcttcaaaa |
200 |
Q |
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| T |
17269279 |
aaaatttgatgggcacaactatgtttaccatcccacatgttcaaatagtgatagttaggttattatacctaaagaaaatatttctcatatctcttcaaaa |
17269180 |
T |
|
| Q |
201 |
aatgttgaaaaataatttgtaaattagtatttgttttttctctctatatacgccaaaagaaatttacatcttgttgtgcatgtaggtccataacatccgt |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
17269179 |
aatgttgaaaaataatttgtaaattagtttttgttttttctctctatatacgccaaaagaaatttacatgttgttgtgcatgtaggtccacaacatccgt |
17269080 |
T |
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| Q |
301 |
atgatggaaatgtttataccaaaatgaagttgggaatagaagagagatgtaatgtgttgctaccatcaatgaatga |
376 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17269079 |
atgatggaaatgttcataccaaaatgaagttgggaatagaagagagatgtaatgtgttgccaccatcaatgaatga |
17269004 |
T |
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