View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_7 (Length: 379)
Name: NF8858_low_7
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 35374866 - 35374504
Alignment:
| Q |
1 |
acaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactca |
100 |
Q |
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| T |
35374866 |
acaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactca |
35374767 |
T |
|
| Q |
101 |
tccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatggtgtttatgaccaactcgtctaagttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35374766 |
tccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatggtgtttctgaccaactcgtctaagttgt |
35374667 |
T |
|
| Q |
201 |
ggacgacatgtgtttgcaattggtcgttagaatagtgacatgaggtattcgtatcttcgtgccttatcagcattgtttgaaggcgagttagaatccagtg |
300 |
Q |
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| T |
35374666 |
ggacgacatgtgtttgcaattggtcgttagaatagtgacgtgaggtattcgtatcttcgtgccttatcagcattgtttgaaggctagttagaatccagtg |
35374567 |
T |
|
| Q |
301 |
gataagtagtacgagaaacagcagaaccaatattatgatggggaagaagtttgaagaaaatag |
363 |
Q |
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| T |
35374566 |
gataagtagtacgagaaacagcagaaccaatattatgatggggaagaagtgtgaagaaaatag |
35374504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 35381120 - 35380949
Alignment:
| Q |
1 |
acaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactca |
100 |
Q |
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| T |
35381120 |
acaattaggttgtttaggaagccaatcttgaatgcaacggagatggaaactctgggaacaaagagggagcgttccaatggtatcattgtcttcaaattca |
35381021 |
T |
|
| Q |
101 |
tccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatg |
172 |
Q |
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| T |
35381020 |
ttcaagcaaataacacaatcacgttgaaattcttcttgtgcatatttagcgttgtagacggaggagaggatg |
35380949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35356907 - 35356797
Alignment:
| Q |
1 |
acaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactca |
100 |
Q |
| |
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||||||||||| |||| |||||||||| |||||||| |||||||||| ||||||||||||||||||| || | ||||| || ||||| |||||| ||| |
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| T |
35356907 |
acaattaggttgtttatgaagccaagcatcaatgcaagcgagatggaaagtgtgggaacaaagagggagagtgcgaatgtaatcattgttttcaaattca |
35356808 |
T |
|
| Q |
101 |
tccaagcaaat |
111 |
Q |
| |
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|||||||||| |
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| T |
35356807 |
accaagcaaat |
35356797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 35351768 - 35351663
Alignment:
| Q |
6 |
taggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaa |
105 |
Q |
| |
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|||||| |||| |||||||||| |||||||| |||||||||| ||||||||||||||||||| || | ||||| || ||||| |||||| ||| |||| |
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| T |
35351768 |
taggttgtttatgaagccaagcatcaatgcaagcgagatggaaaatgtgggaacaaagagggagggtgcgaatgtaatcattgttttcaaattcaaccaa |
35351669 |
T |
|
| Q |
106 |
gcaaat |
111 |
Q |
| |
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|||||| |
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|
| T |
35351668 |
gcaaat |
35351663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 35367925 - 35367719
Alignment:
| Q |
1 |
acaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactca |
100 |
Q |
| |
|
|||||| || ||||||||||||||| | ||||| || |||||||| || |||| |||||| || ||| ||||||| | || |||||||||||| ||| |
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| T |
35367925 |
acaattggggtttttacgaagccaaacctcaatacaatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcattgtcttcaaattca |
35367826 |
T |
|
| Q |
101 |
tccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatggtgtttatgaccaactcgtctaagttgt |
200 |
Q |
| |
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|| || ||||| | ||| |||| ||||||||| | |||||||| ||| ||||||| || | | ||||||||||||| | | || ||||||||||| |
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| T |
35367825 |
tctaaacaaatgatacattcacacgtagattcttcttgtgcatactgagccgtgtagatggaaacgaggatggtgtttataatcgtcttgtctaagttgt |
35367726 |
T |
|
| Q |
201 |
ggacgac |
207 |
Q |
| |
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||||||| |
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| T |
35367725 |
ggacgac |
35367719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 30811986 - 30811863
Alignment:
| Q |
107 |
caaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatggtgtttatgaccaactcgtctaagttgtggacga |
206 |
Q |
| |
|
||||||||||| | |||| | || |||| |||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||| || |||| |
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| T |
30811986 |
caaataacacagtaacgtgcaaatgcttcttttgcatacttagcggtgtagatggagaaggagatggtatttatgaccaactcgtctaagttatgaacga |
30811887 |
T |
|
| Q |
207 |
catgtgtttgcaattggtcgttag |
230 |
Q |
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|||||||||||| ||||||||||| |
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| T |
30811886 |
catgtgtttgcagttggtcgttag |
30811863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 30812058 - 30812002
Alignment:
| Q |
5 |
ttaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaa |
61 |
Q |
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||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||| |
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| T |
30812058 |
ttaggttttttacgaagtcaagcttcaatgcaattgagatggaaattgtgggaacaa |
30812002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 10696808 - 10696703
Alignment:
| Q |
5 |
ttaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatcca |
104 |
Q |
| |
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||||||| ||||| |||||| ||||||||||| |||||||||| |||||||||||||||| || || | |||| || |||||||| ||| ||||||| |
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| T |
10696808 |
ttaggttgtttactaagccatgcttcaatgcaaacgagatggaaagtgtgggaacaaagaggcagggtgcgaatgcgatcattgtctttaaattcatcca |
10696709 |
T |
|
| Q |
105 |
agcaaa |
110 |
Q |
| |
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| |||| |
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|
| T |
10696708 |
aacaaa |
10696703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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