View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8858_low_8 (Length: 352)

Name: NF8858_low_8
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8858_low_8
NF8858_low_8
[»] chr7 (16 HSPs)
chr7 (136-340)||(20063729-20063933)
chr7 (166-337)||(20302491-20302662)
chr7 (169-331)||(20169288-20169450)
chr7 (167-337)||(20293289-20293459)
chr7 (166-337)||(20287921-20288092)
chr7 (188-338)||(20230329-20230479)
chr7 (181-337)||(20272482-20272638)
chr7 (166-336)||(20300419-20300586)
chr7 (166-337)||(20282805-20282976)
chr7 (24-70)||(20063617-20063663)
chr7 (197-337)||(20278226-20278366)
chr7 (188-337)||(20242280-20242429)
chr7 (153-237)||(20090294-20090378)
chr7 (192-316)||(20262919-20263043)
chr7 (227-309)||(19937723-19937805)
chr7 (227-309)||(19968862-19968944)
[»] chr4 (2 HSPs)
chr4 (185-337)||(40820400-40820552)
chr4 (166-307)||(40825048-40825190)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 136 - 340
Target Start/End: Original strand, 20063729 - 20063933
Alignment:
Q  136 gtttcagatgatttaacaacaacacttatggcataccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20063729 gtttcagatgatttaacaacaacacttatggcataccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtc 20063828  T
Q  236 aagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20063829 aagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggt 20063928  T
Q  336 gtctc 340  Q
    |||||    
T  20063929 gtctc 20063933  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 20302662 - 20302491
Alignment:
Q  166 gcataccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaacc 265  Q
    |||||||||||||||  |  | |||||||||||||||||||||||||||  ||| ||||||||||||||||||||| ||||||||||||| ||| || ||    
T  20302662 gcataccaagctctgtctcaggtacgcgaaaatatagatcaagtcctccactttcgagttgttgtatgtcaagtaaattcccagtccaagacatgcagcc 20302563  T
Q  266 aatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgt 337  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  20302562 aatcccagcatcgttggagtatgcagtgcaagagcaattctccaagcataagcttctgcatatatctggtgt 20302491  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 169 - 331
Target Start/End: Original strand, 20169288 - 20169450
Alignment:
Q  169 taccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaaccaat 268  Q
    ||||||| ||| ||| ||||||||||| ||||||||||||||||||  |||| | ||||||||||||| |||  || || ||||||| ||||||||||||    
T  20169288 taccaagttctccattggctacgcgaacatatagatcaagtcctcctctttgaaattgttgtatgtcacgtagattgccggtccaagacatacaaccaat 20169387  T
Q  269 cccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtc 331  Q
    |||| |||| | ||| || |||  |||||||||||||||||||||||  ||||||||||||||    
T  20169388 cccatcatcatgagaatatgcaaggcaagagcaattctccaagcataggcttctgcatatgtc 20169450  T

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Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 337
Target Start/End: Complemental strand, 20293459 - 20293289
Alignment:
Q  167 cataccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaacca 266  Q
    ||||||||| ||||| | |||||| |||| ||||||||| ||||||||  |||||||||| |||||||||||||  || |||||||||| |||||| |||    
T  20293459 cataccaagttctgcgtaggctacacgaacatatagatcgagtcctccactttggagttgatgtatgtcaagtagatttccagtccaagacatacagcca 20293360  T
Q  267 atcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgt 337  Q
    ||||||| ||| | ||| |||||| |||| |||||||| | ||| ||||| ||||||||||| || |||||    
T  20293359 atcccagaatcatgagaatacgcaatgcaggagcaattatgcaaacataagcttctgcatatttctggtgt 20293289  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 20288092 - 20287921
Alignment:
Q  166 gcataccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaacc 265  Q
    |||||||||| ||||||| |||||| |||| ||||| |||||| |||||  ||| || ||||||||| |||| ||  ||||||||||||| |||||||||    
T  20288092 gcataccaagttctgcataggctacacgaacatataaatcaagccctccatttttgaattgttgtatatcaattagattcccagtccaagacatacaacc 20287993  T
Q  266 aatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgt 337  Q
    |||||||||   || ||| || ||| |||||||||||||||| ||||||   ||||| |||||||| |||||    
T  20287992 aatcccagcggtgtgagaatatgcaatgcaagagcaattctctaagcatcggcttctacatatgtctggtgt 20287921  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 338
Target Start/End: Complemental strand, 20230479 - 20230329
Alignment:
Q  188 tacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagagtac 287  Q
    |||||||| |||||| |||||||||||  |||||| |||||||||||||||||  || || ||||||| |||||| ||||||||| |||| | ||| |||    
T  20230479 tacgcgaacatataggtcaagtcctccactttggaattgttgtatgtcaagtagattgccggtccaagacatacagccaatcccatcatcatgagaatac 20230380  T
Q  288 gcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtc 338  Q
    |||   ||||||||||||||||| |||||  |||||||| |||| ||||||    
T  20230379 gcaacacaagagcaattctccaaacataagattctgcatctgtcaggtgtc 20230329  T

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Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 337
Target Start/End: Complemental strand, 20272638 - 20272482
Alignment:
Q  181 catgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaaccaatcccagcatcgtt 280  Q
    |||||||||  |||| ||||||||| |||||||||||||  || ||||||||||||||||  ||  |||||||   |||||| ||||||||| |||| |     
T  20272638 catgggctatacgaacatatagatcgagtcctcccatttcaagctgttgtatgtcaagtagatttgcagtccacagcatacagccaatcccatcatcatg 20272539  T
Q  281 agagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgt 337  Q
    ||| || |||  |||||||||||||||||||||||  |||||||||||||| |||||    
T  20272538 agaatatgcaaggcaagagcaattctccaagcataggcttctgcatatgtcaggtgt 20272482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 336
Target Start/End: Complemental strand, 20300586 - 20300419
Alignment:
Q  166 gcataccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaacc 265  Q
    |||||||| | |||||||||||||| |||| ||||||||||||||||||  |||  ||||||   || |||| ||  |||| |||||||| |||||||||    
T  20300586 gcataccaggttctgcatgggctactcgaacatatagatcaagtcctccactttctagttgt---atatcaattagattcctagtccaagacatacaacc 20300490  T
Q  266 aatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtg 336  Q
    ||| |||||||| | ||| | ||||  ||| |||||||||| ||||||||| |||||||||||||| ||||    
T  20300489 aattccagcatcatgagaattcgcaacgcatgagcaattctacaagcataagcttctgcatatgtctggtg 20300419  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 20282976 - 20282805
Alignment:
Q  166 gcataccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaacc 265  Q
    |||||||||| |||||||  |||  ||| | ||||||||||||||||||  ||||||||||||||||||||||||  ||||| ||||| | |||||| ||    
T  20282976 gcataccaagttctgcatacgctgtgcggacatatagatcaagtcctccactttggagttgttgtatgtcaagtagtttccctgtccacgacatacagcc 20282877  T
Q  266 aatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgt 337  Q
    |||| | | ||| |  || || |||  |||||| ||||||||||||||||  |||||||| ||||| |||||    
T  20282876 aatcacggaatcatgggaatatgcaaggcaagaacaattctccaagcataggcttctgcaaatgtctggtgt 20282805  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 20063617 - 20063663
Alignment:
Q  24 gtaatgatgactgttttatttccccctctatctgtataatgggaaat 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20063617 gtaatgatgactgttttatttccccctctatctgtataatgggaaat 20063663  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 337
Target Start/End: Complemental strand, 20278366 - 20278226
Alignment:
Q  197 atatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagagtacgcagtgcaa 296  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||  ||||| ||||| | |||||| |||||| | | ||| |  || || |||  ||||    
T  20278366 atatagatcaagtcctccactttcgagttgttgtatgtcaagtagtttccctgtccacgacatacagccaatcacggaatcatgggaatatgcaaggcaa 20278267  T
Q  297 gagcaattctccaagcataaccttctgcatatgtccggtgt 337  Q
    || ||||||||||||||||  |||||||| ||||| |||||    
T  20278266 gaacaattctccaagcataggcttctgcaaatgtctggtgt 20278226  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 337
Target Start/End: Complemental strand, 20242429 - 20242280
Alignment:
Q  188 tacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagagtac 287  Q
    |||||||| |||||| ||||||||||| |||| || ||||| |||||||||||  || || ||||||| |||||| |||||| || |||  | ||| |||    
T  20242429 tacgcgaacatataggtcaagtcctccaatttcgaattgttctatgtcaagtagattgccggtccaagacatacagccaatcacatcatgatgagaatac 20242330  T
Q  288 gcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgt 337  Q
    |||   |||||||||||||| || |||||  |||||||| |||| |||||    
T  20242329 gcaacacaagagcaattctctaaacataagattctgcatgtgtcaggtgt 20242280  T

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Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 20090294 - 20090378
Alignment:
Q  153 aacaacacttatggcataccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaa 237  Q
    |||||||| ||| ||||  |||||||||  |||||||| |||||||||||||||||||||||  ||| |||||||| ||||||||    
T  20090294 aacaacacatatagcattacaagctctgtgtgggctacacgaaaatatagatcaagtcctccactttcgagttgttctatgtcaa 20090378  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 20263043 - 20262919
Alignment:
Q  192 cgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagagtacgcag 291  Q
    |||| |||||| |||||||||||  |||||| |||||||||||||||||  || |  ||||||| |||||| |||||| || |||  | ||| ||||||     
T  20263043 cgaatatataggtcaagtcctccactttggaattgttgtatgtcaagtagatttcgggtccaagacatacagccaatcacatcatgatgagaatacgcaa 20262944  T
Q  292 tgcaagagcaattctccaagcataa 316  Q
      ||||||||||||||||| |||||    
T  20262943 cacaagagcaattctccaaacataa 20262919  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 19937805 - 19937723
Alignment:
Q  227 ttgtatgtcaagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagagtacgcagtgcaagagcaattctcca 309  Q
    ||||||||||| || |||||||||||||| ||||||||||||  ||||||| | ||| || |||   ||||||||||||||||    
T  19937805 ttgtatgtcaactaggttcccagtccaagacatacaaccaatgtcagcatcataagaatatgcaacacaagagcaattctcca 19937723  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 19968944 - 19968862
Alignment:
Q  227 ttgtatgtcaagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagagtacgcagtgcaagagcaattctcca 309  Q
    ||||||||||| || |||||||||||||| ||||||||||||  ||||||| | ||| || |||   ||||||||||||||||    
T  19968944 ttgtatgtcaactaggttcccagtccaagacatacaaccaatgtcagcatcataagaatatgcaacacaagagcaattctcca 19968862  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 185 - 337
Target Start/End: Original strand, 40820400 - 40820552
Alignment:
Q  185 ggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagag 284  Q
    |||||| |||| ||||||||| ||||||||  |||||||||| |||||||||||||  ||||||||||||| |||||| |||||||||| ||| | |||     
T  40820400 ggctacacgaacatatagatcgagtcctccactttggagttgatgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaa 40820499  T
Q  285 tacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgt 337  Q
    ||||||  ||| |||||||| | ||  ||||| |||||||||||||| |||||    
T  40820500 tacgcaacgcaggagcaattgtgcagacataagcttctgcatatgtctggtgt 40820552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 40825048 - 40825190
Alignment:
Q  166 gcataccaagctctgcatgggctacgcgaaaatatagatcaagtcctcccattt-ggagttgttgtatgtcaagtaagttcccagtccaagtcatacaac 264  Q
    |||||||||| ||||||| |||||| |||| ||||||||||||||||||  ||| | | ||||||||| |||| ||  || |||||||||| ||||||||    
T  40825048 gcataccaagttctgcataggctacacgaacatatagatcaagtcctccattttagaatttgttgtatatcaattagattgccagtccaagacatacaac 40825147  T
Q  265 caatcccagcatcgttagagtacgcagtgcaagagcaattctc 307  Q
    |||||||||    || ||| || ||| ||||||||||||||||    
T  40825148 caatcccagtggtgtgagaatatgcaatgcaagagcaattctc 40825190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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