View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_9 (Length: 344)
Name: NF8858_low_9
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 3594333 - 3594027
Alignment:
| Q |
16 |
cagagatctagcttggtaaaatcatacaagaggaaaaagtgaactaaaactcttgatgtaagaagggtaaggtttttcttgttgaaaatgtttttggatc |
115 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3594333 |
cagaaatctagcttggtaaaatcatacaagaggaaaaagtgaactaaaactcttgatgtaagaagggg-----ttttcttgttgaaaatgtttttggatc |
3594239 |
T |
|
| Q |
116 |
tatgtttcttcatcatcttcttaatttaaagaataattttannnnnnnnggaccttttgttaatcacagtttgttagacataatattttatttagatata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594238 |
tatgtttcttcatcatcttcttaatttaaagaataatatt-ttttttttggaccttttgttaatcacagtttgttagacataatattttatttagatata |
3594140 |
T |
|
| Q |
216 |
gaaaataaaagattaaaacttttgaataaaataagaactcttttgaatgtgaaatcaaggtattctatttatttcttcatgaaatgtctttatccgtagt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3594139 |
gaaaataaaagattaaaacttttgaataaaataagaactcttttgaatgtgaaatcaaggtattctatttatttcttcatgaaatatctttatccgtagt |
3594040 |
T |
|
| Q |
316 |
tttgtgtaagaga |
328 |
Q |
| |
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||||||||||||| |
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| T |
3594039 |
tttgtgtaagaga |
3594027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 21452515 - 21452267
Alignment:
| Q |
16 |
cagagatctagcttggtaaaatcatacaagaggaaaaagtgaactaaaactcttgatgtaagaagggtaaggtttttcttgttgaaaatgtttttggatc |
115 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
21452515 |
cagaaatctagtttggtaaaatcatacaagaggaaaaagtgaactaaaactcttgatgtgagaagggtaaggtttt-cttgttgaaaatgtttttggatc |
21452417 |
T |
|
| Q |
116 |
tatgtttcttcatcatcttcttaatttaaagaataa-------ttttannnnnnnnggaccttttgttaatcacagtttgttagacataatattttattt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21452416 |
tatgtttcttcatcatcttcttaatttaaagaataatattatgtttttttttttttggaccttttgttaaacacagtttgttagacataatattttattt |
21452317 |
T |
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| Q |
209 |
agatatagaaaataaaagattaaaacttttgaataaaataagaactcttt |
258 |
Q |
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| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21452316 |
atatataaaaaataaaagattcaaacttttgaataaaataagaactcttt |
21452267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 21446109 - 21446048
Alignment:
| Q |
267 |
aaatcaaggtattctatttatttcttcatgaaatgtctttatccgtagttttgtgtaagaga |
328 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21446109 |
aaatcaaggtattcagtttatttcttcatgaaatgtctttatccgtagttttgtgtaagaga |
21446048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 22518829 - 22518695
Alignment:
| Q |
16 |
cagagatctagcttggtaaaatcatacaagaggaaaaagtgaactaaaactcttgatgtaagaagggtaaggtttttcttgttgaaaatgtttttggatc |
115 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||| |
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| T |
22518829 |
cagaaatctagctcggtaaaatcatacaagaggaaaaagtgaactaaaactctt-atgtgagaagggttaggtttt-cttgttgaaaatgtttttggatc |
22518732 |
T |
|
| Q |
116 |
tatgtttcttcatcatcttcttaatttaaagaataat |
152 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22518731 |
tatgtttcttcatcatcttcttaatttaaagaataat |
22518695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 22518671 - 22518630
Alignment:
| Q |
167 |
accttttgttaatcacagtttgttagacataatattttattt |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22518671 |
accttttgttaaacacagtttgttagacataatattttattt |
22518630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 32617562 - 32617666
Alignment:
| Q |
43 |
aagaggaaaaagtgaactaaaactcttgatgtaagaagggtaaggtttttcttgttgaaaatgtttttggatctatgtttcttcatcatcttcttaattt |
142 |
Q |
| |
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||||||| ||||||||| ||| ||||| || ||||| ||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32617562 |
aagaggataaagtgaacaaaagctcttattgagagaagtgtaagatttta-ttcttgaaaatgtttttggatctatgtttcttcatcatattcttaattt |
32617660 |
T |
|
| Q |
143 |
aaagaa |
148 |
Q |
| |
|
|||||| |
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| T |
32617661 |
aaagaa |
32617666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 27431286 - 27431232
Alignment:
| Q |
91 |
ttcttgttgaaaatgttttt-ggatctatgtttcttcatcatcttcttaatttaa |
144 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |
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|
| T |
27431286 |
ttcttgttgaaaatgttttttggatctatgtttcttcatcattttcttattttaa |
27431232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 27431114 - 27431063
Alignment:
| Q |
202 |
tttatttagatatagaa-aataaaagattaaaacttttgaataaaataagaa |
252 |
Q |
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|||||||||| ||| || ||||||| |||||||||||||||||||||||||| |
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| T |
27431114 |
tttatttagacataaaagaataaaaaattaaaacttttgaataaaataagaa |
27431063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 24130794 - 24130833
Alignment:
| Q |
219 |
aataaaagattaaaacttttgaataaaataagaactcttt |
258 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
24130794 |
aataaaagattacaacttttgaataaaataagaactcttt |
24130833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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