View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8859_1 (Length: 1021)

Name: NF8859_1
Description: NF8859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8859_1
NF8859_1
[»] chr1 (7 HSPs)
chr1 (19-642)||(9302455-9303079)
chr1 (19-433)||(9295268-9295686)
chr1 (879-1021)||(9303316-9303458)
chr1 (452-633)||(8769118-8769301)
chr1 (746-808)||(9303183-9303245)
chr1 (767-808)||(8769438-8769479)
chr1 (567-641)||(17018891-17018967)
[»] chr5 (9 HSPs)
chr5 (454-641)||(28675921-28676112)
chr5 (457-642)||(16566296-16566483)
chr5 (494-642)||(16564465-16564616)
chr5 (504-642)||(19071761-19071901)
chr5 (453-631)||(15396887-15397070)
chr5 (582-642)||(27586825-27586886)
chr5 (453-535)||(28702456-28702537)
chr5 (763-800)||(25527414-25527451)
chr5 (504-612)||(38384738-38384847)
[»] scaffold0193 (1 HSPs)
scaffold0193 (457-642)||(18314-18501)
[»] chr2 (8 HSPs)
chr2 (457-642)||(45026266-45026456)
chr2 (457-577)||(20472247-20472368)
chr2 (550-642)||(17881339-17881432)
chr2 (503-642)||(32129424-32129564)
chr2 (453-641)||(18983461-18983649)
chr2 (503-641)||(23174366-23174506)
chr2 (503-641)||(23585623-23585763)
chr2 (767-808)||(45026587-45026628)
[»] chr4 (2 HSPs)
chr4 (457-637)||(12612672-12612854)
chr4 (582-642)||(20355851-20355912)
[»] scaffold2020 (1 HSPs)
scaffold2020 (453-641)||(584-772)
[»] scaffold0009 (2 HSPs)
scaffold0009 (453-641)||(164723-164911)
scaffold0009 (494-608)||(149575-149691)
[»] scaffold0226 (2 HSPs)
scaffold0226 (494-642)||(6598-6749)
scaffold0226 (763-808)||(6425-6470)
[»] chr8 (4 HSPs)
chr8 (504-642)||(17809451-17809591)
chr8 (503-642)||(24710016-24710157)
chr8 (763-800)||(22155795-22155832)
chr8 (763-800)||(22161803-22161840)
[»] chr3 (8 HSPs)
chr3 (508-642)||(20742487-20742622)
chr3 (503-641)||(10708714-10708852)
chr3 (583-642)||(15749370-15749430)
chr3 (508-639)||(20734950-20735082)
chr3 (770-808)||(20742756-20742794)
chr3 (763-800)||(16030147-16030184)
chr3 (557-641)||(23280834-23280919)
chr3 (557-641)||(23286733-23286818)
[»] scaffold0063 (1 HSPs)
scaffold0063 (495-642)||(32701-32852)
[»] chr7 (1 HSPs)
chr7 (503-641)||(11586796-11586937)
[»] chr6 (5 HSPs)
chr6 (476-641)||(14483591-14483757)
chr6 (453-637)||(15646455-15646644)
chr6 (560-641)||(5269033-5269115)
chr6 (767-800)||(2890363-2890396)
chr6 (503-550)||(13541767-13541816)
[»] scaffold0058 (1 HSPs)
scaffold0058 (494-641)||(68547-68695)
[»] scaffold0555 (1 HSPs)
scaffold0555 (561-640)||(3866-3946)
[»] scaffold0236 (1 HSPs)
scaffold0236 (561-641)||(26906-26987)


Alignment Details
Target: chr1 (Bit Score: 576; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 19 - 642
Target Start/End: Original strand, 9302455 - 9303079
Alignment:
Q  19 agtttctgagaaagagataagaaagggacagacattaatgtgatattacatgctgtactccataagatacaatttcttttaaagggaaatctgaggacga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9302455 agtttctgagaaagagataagaaagggacagacattaatgtgatattacatgttgtactccataagatacaatttcttttaaagggaaatctgaggacga 9302554  T
Q  119 tattgaatatgggaaatttgtgaatagtgttccgtacaccaagtccaacattgtctgagaatcgaataaaacggttt-catagaagaaagttggtgttac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9302555 tattgaatatgggaaatttgtgaatagtgttccgtacaccaagtccaacattgtctgagaatcgaataaaacggttttcatagaagaaagttggtgttac 9302654  T
Q  218 cacttaagataatgctnnnnnnncacaacaaattgaccattttaacctcatcgacagttaacaaccaccaaatgtttttcagcagcagtttactaccgtg 317  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9302655 cacttaagataatgctaaaaaaacacaacaaattgaccattttaacctcatcgtcagttaacaaccaccaaatgtttttcagcagcagtttactaccgtg 9302754  T
Q  318 gccattttgtgtcgtagaacaccatatgtttcatcttaatgtactgcaaaatcatcaaaaacgataaatgagtgaaccaaaacgataacatgaaatgtga 417  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9302755 gccattttgtgtcgcagaacaccatatgtttcatcttaatgtactgcaaaatcatcaaaaacgataaatgagtgaaccaaaacgataacatgaaatgtga 9302854  T
Q  418 taaaagcaaaaaagcttaagggaagggggaattgtggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttt 517  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9302855 taaaagcaaaaaagctaaagggaagggggaattgtggatatcaagctattgattaacattgactcagaaattcaggattcactatcgagctttaattttt 9302954  T
Q  518 tcaagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacctaaacgtct 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9302955 tcaagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacctaaacgtct 9303054  T
Q  618 atagtactctataggaacctcttgc 642  Q
    |||||||||||||||||||||||||    
T  9303055 atagtactctataggaacctcttgc 9303079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 9295686 - 9295268
Alignment:
Q  19 agtttctgagaaagagataagaaagggacagacattaatgtgatattacatgctgtactccataagatacaatttcttttaaagggaaatctgaggacga 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9295686 agtttctgagaaagagacaagaaagggacagacattaatgtgatattacatgctgtactccataagatacaatttcttttaaagggaaatctgaggacga 9295587  T
Q  119 tattgaatatgggaaatttgtgaatagtgttccgtacaccaagtccaacattgtctgagaatcgaataaaacggtttcatagaagaaagttggtgttacc 218  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  9295586 tattgaatatgggaaatttgtgaatagtgttccgtataccaagtccaacattgtctgagaatcgaataaaacggtttcatagaagaaagtttgtgttccc 9295487  T
Q  219 acttaagataatgctnnnnnnncacaacaaattgaccattttaacctcatcgacagttaacaaccaccaaatgtttttcagcag-cagtttactaccgtg 317  Q
    |||||||||||||||       || ||||||  |||||||| |||||||||| | |||||||||||||| |||||||||||| | |||||||||||||||    
T  9295486 acttaagataatgct-aaaaaacaaaacaaaacgaccatttcaacctcatcggccgttaacaaccaccagatgtttttcagctgacagtttactaccgtg 9295388  T
Q  318 gccattttgtgt----cgtagaacaccatatgtttcatcttaatgtactgcaaaatcatcaaaaacgataaatgagtgaaccaaaacgataacatgaaat 413  Q
    ||||||||||||    | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  9295387 gccattttgtgtcctacctagaacaccatatttttcatcttaatgtactgcaaaatcaacaaaaacgataaatgagtgaatgaaaacgataacatgaaat 9295288  T
Q  414 gtgataaaagcaaaaaagct 433  Q
    |||||| ||| |||||||||    
T  9295287 gtgatataaggaaaaaagct 9295268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 879 - 1021
Target Start/End: Original strand, 9303316 - 9303458
Alignment:
Q  879 gggatccggatctgtgatgattctggtgttttggatcggttatggattgtgtttgatttgttgactttgtggttttctaggtttatgttgatttagtacg 978  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  9303316 gggatccggatctgtgatgattctggtgttttggatcggttatggattgtgtttgatttgttgaccttgtggttttctaggtttatgttgttttagtacg 9303415  T
Q  979 actttgatgttattgctttgtgtggttggttgactggttttgg 1021  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9303416 actttgatgttattgctttgtgtggttggttgactggttttgg 9303458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 452 - 633
Target Start/End: Original strand, 8769118 - 8769301
Alignment:
Q  452 tggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttc-aagggaaaggggaaaa-gttcgagtaaaccc 549  Q
    |||| |||||||||||||| | |  ||||||| ||||| ||| || || ||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  8769118 tggagatcaagctattgattagcgatgactcataaatttaggttt-accatcgagctttaattttttctaagggaaaggggaaaaagttcgaataaaccc 8769216  T
Q  550 acaattataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctatagga 633  Q
    | |||| | || |||||||||| || || ||||||||||||||||||||||||| |||| |||||||||||| || |||||||||    
T  8769217 ataatttttagtgatttaaggttcgagggttagttacgtaaagagaaggtattatcaccttaaacgtctataatattctatagga 8769301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 746 - 808
Target Start/End: Original strand, 9303183 - 9303245
Alignment:
Q  746 gacaaagtcttttgcctcccatgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg 808  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9303183 gacaaagtcttttgcctcccatgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg 9303245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 808
Target Start/End: Original strand, 8769438 - 8769479
Alignment:
Q  767 tgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg 808  Q
    |||||||||||||| ||||||||||| |||||||||| ||||    
T  8769438 tgagggatcaaaactacgtagttcggggtaaaaagccaagtg 8769479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 17018967 - 17018891
Alignment:
Q  567 aaggtccggggattagttacgtaaagagaaggtatta--ccacctaaacgtctatagtactctataggaacctcttg 641  Q
    ||||||||||| || |||||| ||||||||||| |||  |  ||||||||||||| ||| |||||||||| ||||||    
T  17018967 aaggtccgggggttggttacgcaaagagaaggttttaagcaccctaaacgtctatggtattctataggaagctcttg 17018891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 454 - 641
Target Start/End: Complemental strand, 28676112 - 28675921
Alignment:
Q  454 gatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttcgagtaaac-ccaca 552  Q
    |||||||||||||||||   | || ||||| ||||| ||||||||| |  ||||||||||| || |||||||| |||||||||||||| ||||  |||||    
T  28676112 gatatcaagctattgattggcgttaactcacaaatttaggattcaccacagagctttaattcttccaagggaagggggaaaagttcgaataaaatccaca 28676013  T
Q  553 atta--taagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
    ||||  ||||||||||||||| ||||| |||||||||||||  |||| ||||| || |||||||||||||||||||||||||||||||||||    
T  28676012 attaaataagagatttaaggttcgggggttagttacgtaaaaggaagatattagcatcctaaacgtctatagtactctataggaacctcttg 28675921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 457 - 642
Target Start/End: Complemental strand, 16566483 - 16566296
Alignment:
Q  457 atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttc-aagggaaaggg-gaaaagttcgagtaaacccacaat 554  Q
    ||||| |||||||| | | |||||||| |||||    |||||| | ||||||||||||||||| ||||||||||| ||||||||||| |||| | |||||    
T  16566483 atcaacctattgattagcgttgactcacaaatttttaattcaccaccgagctttaattttttccaagggaaagggagaaaagttcgaataaatc-acaat 16566385  T
Q  555 tataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc 642  Q
    | | ||||||||||||| ||||||||||||| |||||| |||||||||| |||| |||||||||| |||| ||||||||||||||||||    
T  16566384 ttttagagatttaaggttcggggattagttaggtaaagggaaggtattagcaccataaacgtctagagtattctataggaacctcttgc 16566296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 494 - 642
Target Start/End: Complemental strand, 16564616 - 16564465
Alignment:
Q  494 attcactatcgagctttaattttttc-aagggaaaggggaaaa-gttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaa 591  Q
    |||||| | ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| | |||||||||||||  |||| |||||||||||||    
T  16564616 attcaccaccgagctttaattttttccaagggaaaggggaaaaagttcgaataaacccacaattgttagagatttaaggtttgggggttagttacgtaaa 16564517  T
Q  592 gagaaggtattacca-cctaaacgtctatagtactctataggaacctcttgc 642  Q
    | ||||| |||| || |||||||||||||  || ||||||||||||| ||||    
T  16564516 gggaagggattagcatcctaaacgtctatgatattctataggaacctattgc 16564465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 504 - 642
Target Start/End: Complemental strand, 19071901 - 19071761
Alignment:
Q  504 gagctttaatttttt-caagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtatt 602  Q
    ||||||| ||||||| ||||| |||||||||||||| || |||||||   | | ||||||||| ||||| ||||| || |||||| |||| |||||||||    
T  19071901 gagcttttattttttacaaggaaaaggggaaaagtttgaataaaccctatactttaagagattaaaggttcgggggttggttacgcaaagggaaggtatt 19071802  T
Q  603 a-ccacctaaacgtctatagtactctataggaacctcttgc 642  Q
    | || |||||||||||||||||||||||||||||| |||||    
T  19071801 agccccctaaacgtctatagtactctataggaaccccttgc 19071761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 453 - 631
Target Start/End: Complemental strand, 15397070 - 15396887
Alignment:
Q  453 ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttcgagt-aaacccac 551  Q
    |||||||||||||||| | | |||||||||| ||| | ||||||||| | |||  ||||||||||||||| |||  |  |||||||||| | ||||||||    
T  15397070 ggatatcaagctattgcttagcattgactcacaaaattaggattcaccaccgacgtttaattttttcaagagaagagaaaaaagttcgaataaaacccac 15396971  T
Q  552 aatt---ataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctatag 631  Q
    | ||   |||||||||||||||| ||||| |||||| ||| |||  || |||| | || |||||||||||||||||||||||||    
T  15396970 atttaaaataagagatttaaggttcgggggttagttgcgtgaaggaaatgtatcagcaccctaaacgtctatagtactctatag 15396887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 582 - 642
Target Start/End: Complemental strand, 27586886 - 27586825
Alignment:
Q  582 gttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc 642  Q
    |||||| |||| |||||| ||| |||| |||| |||||||||||||||||||||||||||||    
T  27586886 gttacgcaaagggaaggtgttagcaccctaaatgtctatagtactctataggaacctcttgc 27586825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 453 - 535
Target Start/End: Complemental strand, 28702537 - 28702456
Alignment:
Q  453 ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaa 535  Q
    |||||||||||||||||| | | || ||||| ||||| ||||||||| |  ||||||||||| || |||||| ||||||||||    
T  28702537 ggatatcaagctattgattagcgttaactcacaaatttaggattcaccactgagctttaattcttccaaggg-aaggggaaaa 28702456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 763 - 800
Target Start/End: Complemental strand, 25527451 - 25527414
Alignment:
Q  763 cccatgagggatcaaaaccacgtagttcggtgtaaaaa 800  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  25527451 cccatgagggatcaaaacctcgtagttcggggtaaaaa 25527414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 504 - 612
Target Start/End: Complemental strand, 38384847 - 38384738
Alignment:
Q  504 gagctttaatttttt-caagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtatt 602  Q
    ||||||||||||||| ||||| |||||| ||||| | || |||||||  |||| ||||||| | || || | ||| |||||||||| ||| ||| |||||    
T  38384847 gagctttaatttttttcaaggaaaagggaaaaagatggaataaaccctaaattttaagagaataaaagttcaggggttagttacgttaagggaatgtatt 38384748  T
Q  603 accacctaaa 612  Q
    | ||||||||    
T  38384747 agcacctaaa 38384738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 457 - 642
Target Start/End: Complemental strand, 18501 - 18314
Alignment:
Q  457 atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaa-gggaaaggggaaaa-gttcgagtaaacccacaat 554  Q
    |||||||||||||| | | |||||| | ||||| ||| ||||| | ||||||||||||||||||| ||||| |||||||| |||||| ||||||||||||    
T  18501 atcaagctattgattagcgttgactgacaaatttagg-ttcaccaccgagctttaattttttcaaagggaatggggaaaaagttcgaataaacccacaat 18403  T
Q  555 tataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttgc 642  Q
    | | ||||||||||||| || || ||||||||||||   |||||||||| || ||||||| ||||||||||||||||||||||||||||    
T  18402 ttttagagatttaaggttcgagggttagttacgtaagtggaaggtattagcaccctaaacatctatagtactctataggaacctcttgc 18314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 8e-33; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 457 - 642
Target Start/End: Original strand, 45026266 - 45026456
Alignment:
Q  457 atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaatttttt---caagggaaagggg-aaaagttcgagtaaacccaca 552  Q
    |||||||||||||| | |||||||||| ||||| | |||||||   ||||||||||||||||   ||||||||||||| |||||||||| ||||||||||    
T  45026266 atcaagctattgattagcattgactcacaaatttatgattcaccgccgagctttaatttttttttcaagggaaagggggaaaagttcgaataaacccaca 45026365  T
Q  553 attataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttgc 642  Q
    ||| | ||||||||||| | ||||| |||||||||||||  |||  ||||| || |||||||||||||| || | ||||||||||||||||    
T  45026366 atttttagagatttaagtttcgggggttagttacgtaaatggaatatattagcaccctaaacgtctataatattttataggaacctcttgc 45026456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 457 - 577
Target Start/End: Complemental strand, 20472368 - 20472247
Alignment:
Q  457 atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttcgagtaaa-cccacaatt 555  Q
    |||||| ||||||| | | |||||||| ||||| ||||||||| |||||| |||||||||| ||||| ||  || |||||||||| |||| |||||||||    
T  20472368 atcaagttattgattagcgttgactcacaaatttaggattcaccatcgagttttaatttttccaaggaaagaggaaaaagttcgaataaaacccacaatt 20472269  T
Q  556 ataagagatttaaggtccgggg 577  Q
    |||||||||||||||| |||||    
T  20472268 ataagagatttaaggttcgggg 20472247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 550 - 642
Target Start/End: Complemental strand, 17881432 - 17881339
Alignment:
Q  550 acaattataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc 642  Q
    |||||| | ||||||||||||| | | | |||||||||||| | |||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  17881432 acaatttttagagatttaaggttcagaggttagttacgtaacgggaaggtattagcaccctaaacgtctatagtattctataggaacctcttgc 17881339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 503 - 642
Target Start/End: Original strand, 32129424 - 32129564
Alignment:
Q  503 cgagctttaattttttc-aagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtat 601  Q
    |||||||| |||||||| |||| ||| |||||||| |||| |||||||   ||| | ||||||| ||||||||||| || | ||||||||  ||||||||    
T  32129424 cgagcttttattttttccaaggaaaatgggaaaagatcgaataaaccctatatttttagagattaaaggtccgggg-ttggatacgtaaaaggaaggtat 32129522  T
Q  602 taccacct-aaacgtctatagtactctataggaacctcttgc 642  Q
    || ||||  ||||||||||||||||||||| |||||||||||    
T  32129523 tagcaccccaaacgtctatagtactctataagaacctcttgc 32129564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 453 - 641
Target Start/End: Original strand, 18983461 - 18983649
Alignment:
Q  453 ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttcgagtaaacccaca 552  Q
    |||||||||||||||| | | | |||||||| ||||| | || |||| |  |  ||||||||||| |||||||||||||| ||||| ||  ||||||  |    
T  18983461 ggatatcaagctattggttagcgttgactcacaaatttatgactcaccacggttctttaatttttccaagggaaaggggagaagtttgaaaaaaccc-ta 18983559  T
Q  553 attataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
     || ||||||||  ||||||||||| || ||||| | |||  ||||||||| || ||||| |||||||||||  ||||||||||||||||    
T  18983560 tttttaagagatcaaaggtccggggtttggttacattaaggaaaggtattagcaccctaagcgtctatagtatcctataggaacctcttg 18983649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 641
Target Start/End: Complemental strand, 23174506 - 23174366
Alignment:
Q  503 cgagctttaattttttcaagggaa-aggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtat 601  Q
    |||||||| |||||||| | |||| || ||||||||| || |||||||   ||| | ||||| | ||||| ||||| || ||||||| ||| ||||||||    
T  23174506 cgagcttttattttttccaaggaagagaggaaaagttagaataaaccctatattttgagagaataaaggttcgggggttggttacgttaagggaaggtat 23174407  T
Q  602 tacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
    ||  | |||||| |||||||||||| |||||||||||||||    
T  23174406 taggatcctaaatgtctatagtactttataggaacctcttg 23174366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 641
Target Start/End: Complemental strand, 23585763 - 23585623
Alignment:
Q  503 cgagctttaattttttcaagggaa-aggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtat 601  Q
    |||||||| |||||||| | |||| || ||||||||| || |||||||   ||| | ||||| | ||||| ||||| || ||||||| ||| ||||||||    
T  23585763 cgagcttttattttttccaaggaagagaggaaaagttagaataaaccctatattttgagagaataaaggttcgggggttggttacgttaagggaaggtat 23585664  T
Q  602 tacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
    ||  | |||||| |||||||||||| |||||||||||||||    
T  23585663 taggatcctaaatgtctatagtactttataggaacctcttg 23585623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 808
Target Start/End: Original strand, 45026587 - 45026628
Alignment:
Q  767 tgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg 808  Q
    ||||||||||||||||| || ||||| |||||||||||||||    
T  45026587 tgagggatcaaaaccacttaattcggggtaaaaagccgagtg 45026628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 457 - 637
Target Start/End: Original strand, 12612672 - 12612854
Alignment:
Q  457 atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaatttttt-caagggaaa-ggggaaaagttcgagtaaacccacaat 554  Q
    |||||||||||||| | | |||||||| ||||| ||| ||||| | | |||||||||||||| ||||||||| |||||||||||||| |||||||||| |    
T  12612672 atcaagctattgattagcgttgactcacaaatttagg-ttcaccaccaagctttaatttttttcaagggaaatggggaaaagttcgaataaacccacact 12612770  T
Q  555 tataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacct 637  Q
    | | |||||||||| || ||||| |||||||||||||| |||  ||||| || ||||||||||||||||| |||||||||||||    
T  12612771 ttttagagatttaaagttcgggggttagttacgtaaagggaaaatattaacaccctaaacgtctatagtattctataggaacct 12612854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 582 - 642
Target Start/End: Original strand, 20355851 - 20355912
Alignment:
Q  582 gttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc 642  Q
    ||||| ||||| |||||| ||| |||| ||||||||||||||| ||||||| ||||||||||    
T  20355851 gttacctaaagggaaggttttaacaccataaacgtctatagtattctatagaaacctcttgc 20355912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2020 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 453 - 641
Target Start/End: Original strand, 584 - 772
Alignment:
Q  453 ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaa-ttttttcaagggaaaggggaaaagttcgagtaaacccac 551  Q
    |||||||||||||||||| |  ||||||||| |||||    |||||| | |||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  584 ggatatcaagctattgattagtattgactcacaaattttt-attcaccagcgagctttaatttttttcaaggg-aaggggaaaagttcgaataaacccac 681  T
Q  552 aattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
    | ||  |||||||||||||| ||| | || ||||||| ||| |||||| ||| || |||||||||||||| || |||||||||||||||||    
T  682 attttaaagagatttaaggttcggaggttggttacgtgaagggaaggtgttagcaccctaaacgtctatattattctataggaacctcttg 772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 453 - 641
Target Start/End: Complemental strand, 164911 - 164723
Alignment:
Q  453 ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaatttttt-caagggaaaggggaaaagttcgagtaaacccac 551  Q
    |||||||||||||||||| |  ||||||||| |||||    |||||| | |||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  164911 ggatatcaagctattgattagtattgactcacaaattttt-attcaccagcgagctttaatttttttcaagggaa-ggggaaaagttcgaataaacccac 164814  T
Q  552 aattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
    | ||  |||||||||||||| ||| | || ||||||| ||| |||||| ||| || |||||||||||||| || |||||||||||||||||    
T  164813 attttaaagagatttaaggttcggaggttggttacgtgaagggaaggtgttagcaccctaaacgtctatattattctataggaacctcttg 164723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 494 - 608
Target Start/End: Complemental strand, 149691 - 149575
Alignment:
Q  494 attcactatcgagctttaattttttc-aagggaaagggg-aaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaa 591  Q
    |||||| | ||||||||||||||||| |||||||||||| ||||||| || |||||||||| ||  |||||||||||||| ||||| || | ||||| ||    
T  149691 attcaccaccgagctttaattttttccaagggaaagggggaaaagtttgaataaacccacattttaaagagatttaaggttcggggtttggatacgtgaa 149592  T
Q  592 gagaaggtattaccacc 608  Q
    | |||||| ||| ||||    
T  149591 gggaaggtgttagcacc 149575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 494 - 642
Target Start/End: Complemental strand, 6749 - 6598
Alignment:
Q  494 attcactatcgagctttaattttttc-aagggaaagggg-aaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaa 591  Q
    |||||| | ||||||||||||||||| || ||||||||| |||| ||||  |||||||| |||| | ||||||||||||| ||||| |||||||||| ||    
T  6749 attcaccaccgagctttaattttttccaatggaaaggggtaaaaattcggataaacccataattttgagagatttaaggttcgggggttagttacgtcaa 6650  T
Q  592 gagaaggtattaccac-ctaaacgtctatagtactctataggaacctcttgc 642  Q
    | ||||||||||  || ||||| |||||||||| |||| |||||||||||||    
T  6649 gggaaggtattagtactctaaatgtctatagtattctaaaggaacctcttgc 6598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 763 - 808
Target Start/End: Complemental strand, 6470 - 6425
Alignment:
Q  763 cccatgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg 808  Q
    ||||||||||| |||||||||||| ||||| ||||||||| |||||    
T  6470 cccatgagggagcaaaaccacgtacttcggggtaaaaagctgagtg 6425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 7e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 504 - 642
Target Start/End: Complemental strand, 17809591 - 17809451
Alignment:
Q  504 gagctttaattttttc-aagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtatt 602  Q
    ||||||| |||||||| |||| |||||||||||| |||| |||||||  | || ||||||||| ||||| |||   || |||||| |||| ||| |||||    
T  17809591 gagcttttattttttccaaggaaaaggggaaaagatcgaataaaccctaatttttaagagattaaaggttcggaagttggttacgcaaagggaatgtatt 17809492  T
Q  603 accacct-aaacgtctatagtactctataggaacctcttgc 642  Q
    | ||||| |||||||||||||||||||||||||||||||||    
T  17809491 agcaccttaaacgtctatagtactctataggaacctcttgc 17809451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 503 - 642
Target Start/End: Original strand, 24710016 - 24710157
Alignment:
Q  503 cgagctttaattttttc-aagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtat 601  Q
    |||||||| |||||||| |||| ||||||||||||||||| |||||||   ||| | ||||||| ||||| |||   || ||||||||||| ||||||||    
T  24710016 cgagcttttattttttccaaggaaaaggggaaaagttcgaataaaccctatatttttagagattaaaggttcggtagttggttacgtaaagggaaggtat 24710115  T
Q  602 taccacc-taaacgtctatagtactctataggaacctcttgc 642  Q
     |  ||| ||||||||||||| ||||||||||||||||||||    
T  24710116 caagaccctaaacgtctatagcactctataggaacctcttgc 24710157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 763 - 800
Target Start/End: Original strand, 22155795 - 22155832
Alignment:
Q  763 cccatgagggatcaaaaccacgtagttcggtgtaaaaa 800  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  22155795 cccatgagggatcaaaacctcgtagttcggggtaaaaa 22155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 763 - 800
Target Start/End: Original strand, 22161803 - 22161840
Alignment:
Q  763 cccatgagggatcaaaaccacgtagttcggtgtaaaaa 800  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  22161803 cccatgagggatcaaaacctcgtagttcggggtaaaaa 22161840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 3e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 508 - 642
Target Start/End: Original strand, 20742487 - 20742622
Alignment:
Q  508 tttaattttttcaagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca- 606  Q
    |||||||||||||| | |||||||||||| |||| |||||||   ||| | ||||||| || || ||||| ||| |||||||||  |||| ||||| ||     
T  20742487 tttaattttttcaaagaaaaggggaaaagatcgaataaaccctatatttttagagattaaaagttcggggtttaattacgtaaaaggaagatattagcaa 20742586  T
Q  607 cctaaacgtctatagtactctataggaacctcttgc 642  Q
    |||| |||||||||||||||||||||||||||||||    
T  20742587 cctagacgtctatagtactctataggaacctcttgc 20742622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 503 - 641
Target Start/End: Original strand, 10708714 - 10708852
Alignment:
Q  503 cgagctttaattttttcaagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtatt 602  Q
    |||||||| ||||||  |||| |||| | |||||||||| ||| || | || | ||||||||  ||||| ||||| ||  |||||| |||||||||||||    
T  10708714 cgagcttttatttttctaaggaaaagagaaaaagttcgaataaccctaaaaat-taagagatcaaaggttcgggggttgcttacgttaagagaaggtatt 10708812  T
Q  603 accacct-aaacgtctatagtactctataggaacctcttg 641  Q
    | ||||| ||||||||||||||||||||||||||||||||    
T  10708813 aacaccttaaacgtctatagtactctataggaacctcttg 10708852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 583 - 642
Target Start/End: Complemental strand, 15749430 - 15749370
Alignment:
Q  583 ttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc 642  Q
    |||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  15749430 ttacgtaaagggaaggtattagcaccctaaacgtctatagtactctataggaacctcttgc 15749370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 639
Target Start/End: Original strand, 20734950 - 20735082
Alignment:
Q  508 tttaattttttcaagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca- 606  Q
    |||| ||||| ||| | |||||||||||| |||| |||||||   ||| |   ||||| |||||  |||| |||||||||||||  |||||||| | ||     
T  20734950 tttattttttccaaagaaaaggggaaaagatcgaataaaccctatatttttgaagattaaaggtttggggcttagttacgtaaaaggaaggtatcagcaa 20735049  T
Q  607 cctaaacgtctatagtactctataggaacctct 639  Q
    |||| ||||||||||||||||||||||||||||    
T  20735050 cctagacgtctatagtactctataggaacctct 20735082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 770 - 808
Target Start/End: Original strand, 20742756 - 20742794
Alignment:
Q  770 gggatcaaaaccacgtagttcggtgtaaaaagccgagtg 808  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  20742756 gggatcaaaatcacgtagttcggggtaaaaagccgagtg 20742794  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 763 - 800
Target Start/End: Original strand, 16030147 - 16030184
Alignment:
Q  763 cccatgagggatcaaaaccacgtagttcggtgtaaaaa 800  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  16030147 cccatgagggatcaaaacctcgtagttcggggtaaaaa 16030184  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 641
Target Start/End: Original strand, 23280834 - 23280919
Alignment:
Q  557 taagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
    ||||||||||| ||| ||||| |||||||| ||||| |||||| ||| || ||| || |||  |||||||||| ||||||||||||    
T  23280834 taagagatttagggttcgggggttagttacataaagggaaggtgttagcacccttaatgtccgtagtactctacaggaacctcttg 23280919  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 641
Target Start/End: Original strand, 23286733 - 23286818
Alignment:
Q  557 taagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
    ||||||||||| ||| ||||| |||||||| ||||| |||||| ||| || ||| || |||  |||||||||| ||||||||||||    
T  23286733 taagagatttagggttcgggggttagttacataaagggaaggtgttagcacccttaatgtccgtagtactctacaggaacctcttg 23286818  T

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Target: scaffold0063 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 495 - 642
Target Start/End: Complemental strand, 32852 - 32701
Alignment:
Q  495 ttcactatcgagctttaattttttc-aagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaaga 593  Q
    ||||| |||||||||| |||||||| |||| |||||||||||| |||| |||||||   ||| ||||||||| | |||  | || ||||||||| |||      
T  32852 ttcaccatcgagcttttattttttccaaggaaaaggggaaaagatcgaataaaccctatattttaagagattaatggtttgagggttagttacgcaaatg 32753  T
Q  594 gaaggtattaccacc---taaacgtctatagtactctataggaacctcttgc 642  Q
    |||||||||| |||    ||||||||||||||||| ||||| ||||||||||    
T  32752 gaaggtattagcacaccgtaaacgtctatagtactatatagaaacctcttgc 32701  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 503 - 641
Target Start/End: Complemental strand, 11586937 - 11586796
Alignment:
Q  503 cgagctttaattttttc-aagggaaagggg-aaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggta 600  Q
    ||||||||||||||||| |||||||||||| ||||||||||   ||| |||| || ||| |||||| |||| ||||| |||||||||||||| |||| |     
T  11586937 cgagctttaattttttccaagggaaagggggaaaagttcgaaataactcacatttttaaaagattttaggttcgggggttagttacgtaaagggaagatg 11586838  T
Q  601 ttacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
    ||| || |||||| | ||||||||  ||||| ||||||||||    
T  11586837 ttagcaccctaaatgcctatagtatcctatatgaacctcttg 11586796  T

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Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 476 - 641
Target Start/End: Original strand, 14483591 - 14483757
Alignment:
Q  476 ttgactcagaaattcaggattcactatcgagctttaattttttc-aagggaaagggg-aaaagttcgagtaaacccacaattataagagatttaaggtcc 573  Q
    |||||||| ||||| ||| ||||| | | ||||||||| ||||| |||||||||||| |||||||||| ||| ||||||||| | | ||||||||||| |    
T  14483591 ttgactcataaatttagg-ttcaccacctagctttaatattttccaagggaaagggggaaaagttcgaataa-cccacaatttttaaagatttaaggttc 14483688  T
Q  574 ggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
    |||| |||||||||| |||  || |||||| || ||||||||||| ||| | || |||| |||||||||    
T  14483689 gggggttagttacgttaaggaaaagtattagcaccctaaacgtctgtaggattccatagaaacctcttg 14483757  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 453 - 637
Target Start/End: Original strand, 15646455 - 15646644
Alignment:
Q  453 ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttc----gagtaaacc 548  Q
    |||||||||||||||| | | | |||||||| ||||| |||| |||| | ||| |||| |||||| |||||||||||||| || |||    ||  ||| |    
T  15646455 ggatatcaagctattggttagcgttgactcacaaatttaggactcaccaccgatcttttatttttccaagggaaaggggagaaattcaaaggaaaaaaac 15646554  T
Q  549 cacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacct 637  Q
    |  | || ||||||||  || |||| ||| || ||||||| ||| |||||||||| || ||||||||||| |||||  ||||||||||||    
T  15646555 cctatttttaagagatcaaatgtccagggtttggttacgttaagggaaggtattagcaccctaaacgtctgtagtatcctataggaacct 15646644  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 560 - 641
Target Start/End: Original strand, 5269033 - 5269115
Alignment:
Q  560 gagatttaaggtccggggattagttacgtaaagagaaggtatta-ccacctaaacgtctatagtactctataggaacctcttg 641  Q
    |||||| ||||| | ||| || ||||||| ||| |||||| ||| || |||||||||||||| || |||||||||||||||||    
T  5269033 gagattaaaggttcaggggttggttacgttaagggaaggtgttagcctcctaaacgtctataatattctataggaacctcttg 5269115  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 800
Target Start/End: Complemental strand, 2890396 - 2890363
Alignment:
Q  767 tgagggatcaaaaccacgtagttcggtgtaaaaa 800  Q
    ||||||||||||||| ||||||||||||||||||    
T  2890396 tgagggatcaaaacctcgtagttcggtgtaaaaa 2890363  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 503 - 550
Target Start/End: Original strand, 13541767 - 13541816
Alignment:
Q  503 cgagctttaatttt-ttcaagggaaa-ggggaaaagttcgagtaaaccca 550  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  13541767 cgagctttaatttttttcaagggaaagggggaaaagttcgaataaaccca 13541816  T

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Target: scaffold0058 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 494 - 641
Target Start/End: Original strand, 68547 - 68695
Alignment:
Q  494 attcactatcgagctttaattttttcaagggaaaggggaaaagttcgagtaaacccacaattataaga-gatttaaggtccggggattagttacgtaaag 592  Q
    |||||| | ||| ||||||||||| ||| ||||||||| |||||| ||   ||||||| ||| | ||| |||||  ||| |||| |||||||||||||||    
T  68547 attcaccaacgaactttaatttttccaatggaaagggggaaagtttgaaataacccactatttttagaagatttt-ggttcgggaattagttacgtaaag 68645  T
Q  593 agaaggtattacca-cctaaacgtctatagtactctataggaacctcttg 641  Q
     |||||| ||| || ||||||||||| |||||  ||| ||||||||||||    
T  68646 ggaaggtgttagcaccctaaacgtctgtagtatcctacaggaacctcttg 68695  T

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Target: scaffold0555 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 561 - 640
Target Start/End: Original strand, 3866 - 3946
Alignment:
Q  561 agatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctctt 640  Q
    |||||| |||| ||||| |||||||| | ||| |||||| ||| |||| |||||  |||||||||||||||||||||||||    
T  3866 agattttaggttcgggggttagttacatgaagggaaggtgttaacaccctaaacacctatagtactctataggaacctctt 3946  T

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Target: scaffold0236 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 561 - 641
Target Start/End: Original strand, 26906 - 26987
Alignment:
Q  561 agatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttg 641  Q
    ||||||| ||| ||||| |||||||| ||||| |||||||||| |||| |  ||||| |||||||||||  |||||||||||    
T  26906 agatttagggttcgggggttagttacataaagggaaggtattagcaccctttacgtccatagtactctacgggaacctcttg 26987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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