View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8859_10 (Length: 351)
Name: NF8859_10
Description: NF8859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8859_10 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 220 - 348
Target Start/End: Original strand, 5567909 - 5568037
Alignment:
| Q |
220 |
gaattattcttaacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttctcaatacttcaatacttcaatcgttagtgactttgtc |
319 |
Q |
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| T |
5567909 |
gaattattcttaacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttctcaatacttcaatacttcaatcgttagtgacattgtc |
5568008 |
T |
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| Q |
320 |
attgcatttgcaatttaaaacatttgtct |
348 |
Q |
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| T |
5568009 |
attgcatttgcaatttaaaacatttgtct |
5568037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 5567729 - 5567847
Alignment:
| Q |
41 |
agtttatgagggaaattgaacttgtatattattttggaaaatctctattacaaatatacatgatggcttagctagttatagcctctattacttgctatgc |
140 |
Q |
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| T |
5567729 |
agtttatgagggaaattgaacttgtatattattttggaaaatctctattacaaatatacatgatggcttagctacttatagcctctattacttgctatgc |
5567828 |
T |
|
| Q |
141 |
aagttacttgttgttcaag |
159 |
Q |
| |
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||||||||||||||||||| |
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| T |
5567829 |
aagttacttgttgttcaag |
5567847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 5567336 - 5567370
Alignment:
| Q |
14 |
gagaagggaagagagaagaaattagagagtttatg |
48 |
Q |
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| T |
5567336 |
gagaagggaagagagaagaaattagatagtttatg |
5567370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 21549327 - 21549260
Alignment:
| Q |
224 |
tattcttaacactcttccttaattcatgtttgttgaatt----caccatgtccatcatgcttctcaat |
287 |
Q |
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| T |
21549327 |
tattcttaacactcttccttaattcatgttttttgaattcacccaccatgcccatcatgcttctcaat |
21549260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 4928077 - 4928033
Alignment:
| Q |
230 |
taacactcttccttaattcatgtttgttgaattcaccatgtccat |
274 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4928077 |
taacactcttccttaattcatgtttgttgaattcaccatgcccat |
4928033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 24413070 - 24413122
Alignment:
| Q |
231 |
aacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttct |
283 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||| |
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|
| T |
24413070 |
aacactcttccttaattcatgtttgctgaatccaccatgcccatcattcttct |
24413122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 8531613 - 8531561
Alignment:
| Q |
231 |
aacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttct |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |
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|
| T |
8531613 |
aacactcttccttaattcatgtttgttgaatcaaccatgcccatcattcttct |
8531561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 26344931 - 26344976
Alignment:
| Q |
37 |
agagagtttatgagggaaattgaacttgtatattattttggaaaat |
82 |
Q |
| |
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|||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
26344931 |
agagagtttatgggagaaattgagcttgtatattattttggaaaat |
26344976 |
T |
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