View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8859_12 (Length: 305)
Name: NF8859_12
Description: NF8859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8859_12 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22275022 - 22274802
Alignment:
| Q |
1 |
cactaactatataatttgttgatccacaagctttcatacatacatctttgaaataggttaatcttccacacattttgcaattttggtgaaaaattaataa |
100 |
Q |
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| T |
22275022 |
cactaactatataatttgttgatccacaagctttcatacatacatctttgaaataggttagtcttccacacattttgcaattttggtgaaaa-ttgataa |
22274924 |
T |
|
| Q |
101 |
tatagtttgtagctgattccattgatctactcaatttaaaagctagattgaaacctgatagtcaaatgtttattgggatatttgctgcatgtagtatact |
200 |
Q |
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| T |
22274923 |
tatagtttgtagctgattccattgatctactcaatttaaaagctagattgaaacttgatagtcaaatgtttattgggatatttgctgcatgtagtatgct |
22274824 |
T |
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| Q |
201 |
agcagatcgagaaatggagtat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
22274823 |
agcagatcgagaaatggagtat |
22274802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 22274804 - 22274758
Alignment:
| Q |
254 |
tatattttaccaattatgtctgcattttattcttatagtggacatgat |
301 |
Q |
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| T |
22274804 |
tatattttaccaattatgtc-gcattttgttcttatagtggacatgat |
22274758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 22267222 - 22267139
Alignment:
| Q |
115 |
gattccattgatctactcaatttaaaagct-agattgaaacctgatagtcaaatgtttattgggatatttgctgcatgtagtat |
197 |
Q |
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|||||| |||||||||||| || |||| | |||||||||||| ||| ||||||||||||| ||||||||| || || |||||| |
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| T |
22267222 |
gattcctttgatctactcatttaaaaatttgagattgaaacctaataatcaaatgtttattcggatatttgttgtatttagtat |
22267139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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