View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8859_3 (Length: 670)
Name: NF8859_3
Description: NF8859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8859_3 |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 21 - 643
Target Start/End: Original strand, 54219077 - 54219711
Alignment:
| Q |
21 |
tgtgccattttctgtcaaacactttaccaattggatttcaatttcatctccatcaaaatctgaaaaagaacataatttgagagaagatttgatacagcaa |
120 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54219077 |
tgtggcattttctgtcaaacactttaacaattggatttcaatttcatctccatcaaaatctgaaaaagaacataatttgagagaagatttgatacagcaa |
54219176 |
T |
|
| Q |
121 |
ggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctga-caagaaccaatatacaagtcaat----gtaaagaaataatattag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54219177 |
ggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctgaacaagaaccaatatacaagtcaattaatgtaaagaaataatattag |
54219276 |
T |
|
| Q |
216 |
ttgtgagtcgagagataagaagtagaagaaatgatgcaagatataagatataccttggaaatgtgaagaacttccagtttaggagttttacggagaatgt |
315 |
Q |
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||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54219277 |
ttgtgagacaagacataagaagtagaagaaatgatgcaagatataagatataccttggaaatgtgaagaacttccagtttaggagttttacggagaatgt |
54219376 |
T |
|
| Q |
316 |
ctactaatagttcacaactaacataacaataccccaaattaaaatcatgtcaagtttcgtcaaattgttgaatgaaggcaaaagatgaccacaatttctt |
415 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54219377 |
ctactaatagttcacaactaacataaaaataccccaaa-----atcatgtcaagtttcgtcaaattgttgaatgaaggcaaaagatgaccacaatttctt |
54219471 |
T |
|
| Q |
416 |
ggataagaaaaacgctggttaaggaaacaaaaatagattcattattgtgacatataaagaacatgcaatgaataaagaagcacataacggggagaacatt |
515 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54219472 |
ggataagaaaaacgctggttaaggaaacaaaaataaattcattattgtgacatataaagaacatgcaatgaataaagaagcacataacgggaagaacatt |
54219571 |
T |
|
| Q |
516 |
gtcaatagtcattttcttatacaatat------------tnnnnnnnnngatgataagtaaatattcaaacatacctcaatagtattatttgttagtttg |
603 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54219572 |
gtcaatagtcattttcttatacaatatttaaaaaaaaaataaaaaaaaagatgataagtaaatattcaaacatacctcaatagtattatttgttagtttg |
54219671 |
T |
|
| Q |
604 |
agagacttgacactaacaagttcactcaatagctccattg |
643 |
Q |
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| T |
54219672 |
agagacttgacactaacaagttcactcaatagctccattg |
54219711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 31217482 - 31217613
Alignment:
| Q |
26 |
cattttctgtcaaacactttaccaattggatttcaatttcatctccatcaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaa |
125 |
Q |
| |
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|||||||| |||| |||| |||||| |||||| |||||||||| ||||||||||| | |||| |||||||||||||||||| ||||||||||| |
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| T |
31217482 |
cattttctaacaaaaacttcaccaatctgatttcggcttcatctccacgaaaatctgaaatatcacatgatttgagagaagatttgaaacagcaaggcag |
31217581 |
T |
|
| Q |
126 |
agaatctgatgtcaagtcttcattatccaagg |
157 |
Q |
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|||||||||||| |||||||| ||||||||| |
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|
| T |
31217582 |
tgaatctgatgtccagtcttcactatccaagg |
31217613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 31217729 - 31217790
Alignment:
| Q |
274 |
aaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaacta |
335 |
Q |
| |
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|||||||||||| ||| ||||||||| | || |||||||||||| |||||| |||||||||| |
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| T |
31217729 |
aaatgtgaagaaattctagtttaggactctttcggagaatgtctgctaatacttcacaacta |
31217790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 615
Target Start/End: Original strand, 31239041 - 31239087
Alignment:
| Q |
569 |
tcaaacatacctcaatagtattatttgttagtttgagagacttgaca |
615 |
Q |
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| T |
31239041 |
tcaaacatacctcgagagtatcatttgctagtttgagagacttgaca |
31239087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 17595368 - 17595307
Alignment:
| Q |
75 |
aaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
136 |
Q |
| |
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||||||||||| |||||||| ||||||||||||| ||| ||| ||||| || |||| ||||| |
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| T |
17595368 |
aaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
17595307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 643
Target Start/End: Original strand, 14728597 - 14728669
Alignment:
| Q |
571 |
aaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattg |
643 |
Q |
| |
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|||||||||| || ||||| ||||| || | ||||||| ||||||||| ||||| |||||||||||| |||| |
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| T |
14728597 |
aaacatacctgaagagtatcatttgatattgtgagagatttgacactaccaagtcgactcaatagctcaattg |
14728669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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