View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8859_4 (Length: 538)
Name: NF8859_4
Description: NF8859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8859_4 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 29 - 532
Target Start/End: Complemental strand, 29240907 - 29240412
Alignment:
| Q |
29 |
tttttggtcaagataaattgctggtttagagaagtaattggaaacatacttatttatctgcaacatttctctgcaaatttcattgatatgggaggtaatg |
128 |
Q |
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| T |
29240907 |
tttttggtcaagataaattgctggtttagaggagtaattggaaacatacttatttatctgcaacatttctctgcaaatttcattgatatgg-aggtaatg |
29240809 |
T |
|
| Q |
129 |
ctacaaggaagccatagatggagattcacaaggctctatggaataccataaaatggtcgtagaagggagtcttggaaccttcaatgcacacttgctcggg |
228 |
Q |
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| T |
29240808 |
cgacaaggaagccatagatggagattcacacggctctatggaataccataaaatggtcgtagaagggagtcttggaaccttcaatgcacacttgcttggg |
29240709 |
T |
|
| Q |
229 |
acaactcacttccatggtgtgttattacttattagagatttgaacgattttctttcaaatgaggacaatagaggctgaggggagcttgctccttggttat |
328 |
Q |
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| T |
29240708 |
acaactcacttccatggtgtgttatta-------gagatttgaacgattttctttcaaatgaggacaatagaggctgaggggagcttgctccttggttat |
29240616 |
T |
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| Q |
329 |
tgagggatttcagagaggcagttatggaatgagaattgcaagatttaccgtcggagtgacatcacttcagatggataaaaagtaaaggtgtgtattggat |
428 |
Q |
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| T |
29240615 |
tgagggatttcagagaggcatttatggaatgagaattgcaagatttaccgtcggagtgacatcacttcagatggataaaaagtaaaggtgtgtattggat |
29240516 |
T |
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| Q |
429 |
tagagcatatctaaggaaaaacaagaagctttccggaagcagaaggaaaaggtgtatcggatcagaaatggtgatgcaaattccaaattatttcagacaa |
528 |
Q |
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| T |
29240515 |
tagagcatatctagagcaaaacaagaagctttctggaagcagaaggaaaaggtgtattggatcagaaatggtgatgcaaattccaaattatttcagacaa |
29240416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 35 - 406
Target Start/End: Complemental strand, 29267163 - 29266801
Alignment:
| Q |
35 |
gtcaagataaattgctggtttagagaagtaattggaaacatacttattt-atctgcaacatt------tctctgcaaatttcattgatatgggaggtaat |
127 |
Q |
| |
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|||||||| ||||||| |||||||||| | ||||||||||| |||||| || | ||||||| ||||| |||||||||||||| | ||||||| |
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| T |
29267163 |
gtcaagatcaattgctagtttagagaattgattggaaacatccttattccatttacaacattaatatttctcttcaaatttcattgatgtta-aggtaat |
29267065 |
T |
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| Q |
128 |
gctacaaggaagccatagatggagattcacaaggctctatggaataccataaaatggtcgtagaagggagtcttggaaccttcaatgcacacttgctcgg |
227 |
Q |
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|| |||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29267064 |
gcgacaagggagccgtagatggagattcatgtggttctatggaataccataaaatggtcgtagaagggagtcttggaaccttcaatgcacacttgctcgg |
29266965 |
T |
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| Q |
228 |
gacaactcacttccatggtgtgttattacttattagagatttgaacgattttctttcaaatgaggacaatagaggctgaggggagcttgctccttggtta |
327 |
Q |
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||||||| ||||||||| ||| || || ||||||| ||| |||| ||||||||||| |||| |||| |||| | |||||||||||| |
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| T |
29266964 |
gacaactgacttccatgacgtg-------tttttggagattttaacaatttgctttcaaatgatgacattaga---tgagtg-----tgctccttggttg |
29266880 |
T |
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| Q |
328 |
ttgagggatttcagagaggcagttatggaatgagaattgcaagatttaccgtcggagtgacatcacttcagatggataa |
406 |
Q |
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||||||| ||||||||| ||||||||||| || ||||||||||||||||| |||| |||||| ||| ||||||||| |
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| T |
29266879 |
ttgaggggtttcagagaagcagttatggattgccaattgcaagatttaccgcaggagaaacatcatttcggatggataa |
29266801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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