View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8859_6 (Length: 390)
Name: NF8859_6
Description: NF8859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8859_6 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 21 - 301
Target Start/End: Original strand, 34873181 - 34873466
Alignment:
| Q |
21 |
ctatattctagaaagcaaggacagacactgacatgaaaactgttccaatgcactgagtaaacatgtaagtcatgtatctatttcatattttaactcgata |
120 |
Q |
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| T |
34873181 |
ctatattctagaaagcaaggacacacactgacatgaaaaatgttccaatgcactgagtaaacatgtaagtcatgtatctatttcatattttaactcgata |
34873280 |
T |
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| Q |
121 |
aggccatttaacattgaaaaataaaattaggattttctaaataccaagtattatcgacacagaacatattcttactgtaaatcttgaagatatgtatgtt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
34873281 |
aggccatttaacattgaaaaataaaattaggattttctaaataccaagtattatcgacacagaacatattcttattgtaaatcttgaagctatgtatgtt |
34873380 |
T |
|
| Q |
221 |
a---aggagggtgtctacatatgcatcacgagttcttttactaaattttttaactatgtgtgtg--ctatttaccatgtcctacag |
301 |
Q |
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| T |
34873381 |
aattaggagggtgtctacatatgcatcacgagttcttttattaaaatttttaattatgtgtgtgcactatttaccatgtcctacag |
34873466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 9919170 - 9919035
Alignment:
| Q |
20 |
actatattctagaaagcaaggacagacactgacatgaaaactgttccaatgcactgagtaaacatgtaagtcatgtatctatttcata-ttttaactcga |
118 |
Q |
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| T |
9919170 |
actatattctagaaagcaaggacacacactgacatgaaaattgttccaatgcactaaggaaacatgttaatcttgcatctgtttcatatttttaactcga |
9919071 |
T |
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| Q |
119 |
taaggccatttaacattgaaaaataaaattaggatt |
154 |
Q |
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| T |
9919070 |
catggccatttaacattgaaaaataaaattaggatt |
9919035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 34873489 - 34873537
Alignment:
| Q |
328 |
cgtgcatattttatcacatgtcaaagtcgacatcaatgcttcacaggtt |
376 |
Q |
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| T |
34873489 |
cgtgcctattttatcacatgtcaaagtcaacatcaatgcttcacaggtt |
34873537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 34874885 - 34874950
Alignment:
| Q |
79 |
aaacatgtaagtcatgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaatta |
149 |
Q |
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| T |
34874885 |
aaacatgttagtcatgtatctgtttcatattttaactc-----ggtcatttaacattgaaaaataaaatta |
34874950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 34872135 - 34872091
Alignment:
| Q |
328 |
cgtgcatattttatcacatgtcaaagtcgacatcaatgcttcaca |
372 |
Q |
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| T |
34872135 |
cgtgcctattttatcacatgtcaaagtcaacatcaatgcttcaca |
34872091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 34872233 - 34872162
Alignment:
| Q |
228 |
gtgtctacatatgcatcacgagttcttttactaaattttttaacta--tgtgtgtgctatttaccatgtcct |
297 |
Q |
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|||||||||||||||||| |||||||||| ||||| |||| || || ||||||||||||||||| |||||| |
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| T |
34872233 |
gtgtctacatatgcatcatgagttcttttcctaaaattttcaattatgtgtgtgtgctatttaccgtgtcct |
34872162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 267
Target Start/End: Complemental strand, 9919019 - 9918905
Alignment:
| Q |
154 |
tttctaaataccaagtattatcgacacagaacatat-tcttactgtaaatcttgaagatatgt--atgttaaggagggtgtctacatatgcatcacgagt |
250 |
Q |
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||||| |||||| |||||||| |||||||||||| | || || |||||||||||||| ||||| ||||||||||||||||| ||||| || | ||| |
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| T |
9919019 |
tttctgaataccgagtattattgacacagaacatgtatcatattgtaaatcttgaagctatgtgagtgttaaggagggtgtcttcatat--ataatcagt |
9918922 |
T |
|
| Q |
251 |
tcttttactaaattttt |
267 |
Q |
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|||||| |||||||||| |
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| T |
9918921 |
tcttttcctaaattttt |
9918905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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