View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8859_7 (Length: 387)
Name: NF8859_7
Description: NF8859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8859_7 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 345
Target Start/End: Complemental strand, 5332241 - 5331925
Alignment:
| Q |
29 |
cctcttttgtatcatcttggtggcatgtgaaccttacaagaacctataacgtataaatacatgagtcaattatctatatacttgcatttcaaataaaact |
128 |
Q |
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| T |
5332241 |
cctcttttgtatcatcttggtggcatgtgaaccttacaagaacctataacgtataaatacatgagtcaaatatctatatacttgcatttcaaataaaact |
5332142 |
T |
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| Q |
129 |
tgggattaaattaaattatattggtgtattacttgagaatttgttatgacttaaagtttatgaggagagttcaaccnnnnnnnttagtctattaaacgat |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
5332141 |
tgggattaaattaaattatattggtgtattacttgagaatttgttatgacttaaagtttataaggagagttcaaccaaaaaaattagtctattaaacgag |
5332042 |
T |
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| Q |
229 |
agaacgtcatagtttaagtatcacactgaactttattttctactcgacatgtaactcataacattgccactcctttaagaaccgatgatcacaacgactt |
328 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332041 |
agaacgtcatagtttaagtatcacactgaactttcttttctactcgacatgtaactcataacattgccactcctttaagaaccgatgatcacaacgactt |
5331942 |
T |
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| Q |
329 |
tcactccctttacactg |
345 |
Q |
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| |||| |||||||||| |
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| T |
5331941 |
ttactctctttacactg |
5331925 |
T |
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