View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8859_8 (Length: 377)
Name: NF8859_8
Description: NF8859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8859_8 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 42025949 - 42025686
Alignment:
| Q |
27 |
tcaggaccttccctaagaggattgtcaatggcataaacagtaccaaacaatgaatgtttcttaggaatgtcacttatttggttagcacgtgccacaacaa |
126 |
Q |
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| T |
42025949 |
tcaggaccttccctaagaggattgtcaatggcataaacagtaccaaacaatgaatgtttcttaggaatgtcacttgtttggttagcacgtgccacaacaa |
42025850 |
T |
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| Q |
127 |
ctgcacttgggttattgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttaccttatttggtagctcatgtggaactatactctcagaatgaaa |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42025849 |
ctgcacttgggttattgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttaccttatttggtagctcatgtggaactatactctcagaataaaa |
42025750 |
T |
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| Q |
227 |
gtattcacaatggatcaagttgatacttaggcagaggaataggataaaaaatggggtgaatatg |
290 |
Q |
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| T |
42025749 |
gtattcacaatggatcaagttgatacttaggcagaggaataggataaaaaatagggtgaatatg |
42025686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 140 - 290
Target Start/End: Complemental strand, 1253045 - 1252895
Alignment:
| Q |
140 |
attgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttaccttatttggtagctcatgtggaactatactctcagaatgaaagtattcacaatgg |
239 |
Q |
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| T |
1253045 |
attgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttcccttatttggtagctcatgtggaactatattctcagaatgaaagtattcacaatgg |
1252946 |
T |
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| Q |
240 |
atcaagttgatacttaggcagaggaataggataaaaaatggggtgaatatg |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252945 |
atcaagttgatacttaggcagaggaataggataaaaaatggggtgaatatg |
1252895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 346 - 377
Target Start/End: Complemental strand, 1252839 - 1252808
Alignment:
| Q |
346 |
tgtggtgatagtgcaagtgtatgtgtgcatat |
377 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1252839 |
tgtggtgatagtgcaagtgtatgtgtgcatat |
1252808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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