View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8859_9 (Length: 363)

Name: NF8859_9
Description: NF8859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8859_9
NF8859_9
[»] chr7 (16 HSPs)
chr7 (32-362)||(2136542-2136874)
chr7 (32-131)||(2139775-2139874)
chr7 (200-293)||(2139933-2140028)
chr7 (228-293)||(2690321-2690386)
chr7 (228-299)||(2074467-2074538)
chr7 (228-299)||(2100356-2100427)
chr7 (232-293)||(2115371-2115432)
chr7 (228-291)||(2059276-2059339)
chr7 (234-293)||(2127572-2127631)
chr7 (37-114)||(2067087-2067164)
chr7 (234-293)||(2067598-2067657)
chr7 (37-114)||(2099914-2099991)
chr7 (32-84)||(2074182-2074234)
chr7 (134-192)||(2058918-2058977)
chr7 (303-349)||(2140152-2140197)
chr7 (303-344)||(2244000-2244041)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 32 - 362
Target Start/End: Original strand, 2136542 - 2136874
Alignment:
Q  32 ttacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattggttttttggatgaaatactagacacaaacatgttttgaatact 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  2136542 ttacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattggtcttttggatgaaatgctagacacaaacatgttttgaatact 2136641  T
Q  132 ataggaatggactgcatataacaaatgaaa-tgatttctagtgaacttgattatcattgaccnnnnnnn-ctttgttttctattttctagacatttggct 229  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  2136642 ataggaatggactgcatataacaaatgaaaatgatttctagtgaacttgattatcattgaccaaaaaaaactttgttttctattttctagacatttggct 2136741  T
Q  230 attatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaattgacttcagtctagaactgactgtccatgtaagagc 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2136742 attatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaattgacttcaatctagaactgactgtccatgtaagagc 2136841  T
Q  330 ttgcacaaatttattgaaaatttatatcaaagc 362  Q
    |||||||||||||||||||||||||||||||||    
T  2136842 ttgcacaaatttattgaaaatttatatcaaagc 2136874  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 2139775 - 2139874
Alignment:
Q  32 ttacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattggttttttggatgaaatactagacacaaacatgttttgaatact 131  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||| |  || ||||||||||||| ||||||||||||||||||||||||||    
T  2139775 ttacaaacaaaacttgagaccatacaaacaccattgtatttgaatattttgaactgtgtgttttggatgaaatgctagacacaaacatgttttgaatact 2139874  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 2139933 - 2140028
Alignment:
Q  200 ctttgttttctattttctagacatttggct--attatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 293  Q
    ||||||||||||||||||||||||||| ||  |||||| || || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2139933 ctttgttttctattttctagacatttgtctctattattggattcggcaatttcctctgattttcttgctacttgcattcttggaaaacaatttaat 2140028  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 2690386 - 2690321
Alignment:
Q  228 ctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 293  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  2690386 ctattatttgactcagcagtttgctctgattttcttgctacttgcatttttggaaaacaatttaat 2690321  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 2074467 - 2074538
Alignment:
Q  228 ctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaattgactt 299  Q
    ||||| |||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  2074467 ctattgtttgactcagcaatttcctatgactttcttgcttcttgcattcttggaaaacaatttaattgactt 2074538  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 2100356 - 2100427
Alignment:
Q  228 ctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaattgactt 299  Q
    ||||| |||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  2100356 ctattgtttgactcagcaatttcctatgactttcttgcttcttgcattcttggaaaacaatttaattgactt 2100427  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 2115371 - 2115432
Alignment:
Q  232 tatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 293  Q
    |||||||||||||||||| ||||||||||||| ||||||||| | |||||||||||||||||    
T  2115371 tatttgactcagcaatttcctctgattttcttcctacttgcaattttggaaaacaatttaat 2115432  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 2059276 - 2059339
Alignment:
Q  228 ctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaattta 291  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  2059276 ctattgttagactcagcaatttgctctgatttttttgctacttgcattttttgaaaacaattta 2059339  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 2127572 - 2127631
Alignment:
Q  234 tttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 293  Q
    |||||||||||||||| |||| | |||||||||||||||||  |||||||||||||||||    
T  2127572 tttgactcagcaatttcctctaagtttcttgctacttgcatctttggaaaacaatttaat 2127631  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 2067087 - 2067164
Alignment:
Q  37 aacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattggttttttggatgaaatactagacaca 114  Q
    ||||||||| ||||||  |||||||||||||||||| ||||||||||| |   | ||||||||||||| |||||||||    
T  2067087 aacaaaacaagagacctgacaaacaccattgtattttaatattttgaactgaatgttttggatgaaatgctagacaca 2067164  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 2067598 - 2067657
Alignment:
Q  234 tttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 293  Q
    |||||||||||||||| | || | |||||||||||||||||  |||||||||||||||||    
T  2067598 tttgactcagcaatttccgctaagtttcttgctacttgcatctttggaaaacaatttaat 2067657  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 2099914 - 2099991
Alignment:
Q  37 aacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattggttttttggatgaaatactagacaca 114  Q
    ||||||||| ||||||  |||||||||||||||||| ||||||||||| |   | ||||||||||||  |||||||||    
T  2099914 aacaaaacaagagacctgacaaacaccattgtattttaatattttgaagtgaatgttttggatgaaaagctagacaca 2099991  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 2074182 - 2074234
Alignment:
Q  32 ttacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaa 84  Q
    |||| ||||||||| ||||||  |||||||||||||||||| |||||||||||    
T  2074182 ttactaacaaaacaagagacctgacaaacaccattgtattttaatattttgaa 2074234  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 2058918 - 2058977
Alignment:
Q  134 aggaatggactgcatataacaaatgaaa-tgatttctagtgaacttgattatcattgacc 192  Q
    ||||||||| || ||||||||||| ||| || ||| ||||||||||||||||||||||||    
T  2058918 aggaatggagtgtatataacaaataaaaatgttttgtagtgaacttgattatcattgacc 2058977  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 2140152 - 2140197
Alignment:
Q  303 tctagaactgactgtccatgtaagagcttgcacaaatttattgaaaa 349  Q
    ||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  2140152 tctagaactgactgtccat-taagagcttgctcaaatttattcaaaa 2140197  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 2244041 - 2244000
Alignment:
Q  303 tctagaactgactgtccatgtaagagcttgcacaaatttatt 344  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||    
T  2244041 tctagaactgactatccatgtaaaagcttgcacaattttatt 2244000  T

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