View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_high_1 (Length: 573)
Name: NF8860_high_1
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 261 - 555
Target Start/End: Complemental strand, 48308613 - 48308337
Alignment:
| Q |
261 |
caagtaatgatgagtttggtaaaccttcaagagcaggaggaggagccaaatcacaagtatttttaaattattcaaggtctgagaataattaattcatgtg |
360 |
Q |
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| T |
48308613 |
caagtaatgatgagtttggtaaaccttcaagagcaggaggaggagccaaatcacaagtatttttaaattattcaaggtctgagaagaattaattcatgtg |
48308514 |
T |
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| Q |
361 |
tttgataatagtttatagaaataattaatgatctgaagcaatctgttgaggtctgtgttctactgcttataattataagctgannnnnnnnaatagccaa |
460 |
Q |
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| T |
48308513 |
tttgataatagtttatagaaataattaatgatctgaagcaatctgttgaggtctgtgttctactgctttt--tt------tg----------atagccaa |
48308432 |
T |
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| Q |
461 |
ttggtgattgtatggacgtacgctattaatttggttcatgcacatttctcacctaaggttactctgctttcatcgttgatggtattagaaattag |
555 |
Q |
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| T |
48308431 |
ttggtgtttgtatggacgtacgctattaatttggttcatgaacatttctcacctaaggttactctgctttcatcgttgatggtattagaaattag |
48308337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 48308864 - 48308654
Alignment:
| Q |
10 |
gattattctggtcattgcatgaaggaagcatatctggctatgacaatacctttgaaaagagaccttaccaccgtaaatgtggttgtgcacttcataataa |
109 |
Q |
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| T |
48308864 |
gattattctggtcattgcatgaaggaagcatatctggctatgacaatacctttgaaaagagaccttaccaccgtaaatgtggttgtgcacttcataataa |
48308765 |
T |
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| Q |
110 |
aaagtcacgtatgaattacaagcacatgctaccaagttgttgtaacaagaccgtgtcttatcctatcaagaaagaacgtaggagtttggtcgtgaaaaca |
209 |
Q |
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| T |
48308764 |
aaagtcacgtatgaattacaagcacatgctaccaagttgttgtaacaggaccgtgtcttatcctatcaagaaagaacgtaggagtttggtcgtgaaaaca |
48308665 |
T |
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| Q |
210 |
gcttcaactac |
220 |
Q |
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| T |
48308664 |
gcttcaactac |
48308654 |
T |
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