View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_high_11 (Length: 248)
Name: NF8860_high_11
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 3413869 - 3414092
Alignment:
| Q |
20 |
atcttcattgtccaaatcaaaatacacacacaatttagataaaccaacaaaaagaggaacaaatattgttatgaactatttttaagggtaaaagacaaaa |
119 |
Q |
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| T |
3413869 |
atcttcattgtccaaatcaaaatacacacacaatttagataaaccaacaaaaagaggaacaaatattgttatgaactatttttaagggtaaaagacaaaa |
3413968 |
T |
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| Q |
120 |
gtgtagatgaaaataaagaggcggttgaagaattagactcggaataaaacatatccgcaaagcaattttgcttttacgcacgacgagcgaaccaaagtat |
219 |
Q |
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| T |
3413969 |
atgtacatgaaaataaagaggtggttgaagaattagacttggaataaaacatatcggcaaagcaattttacttttacgcacgacgagcaaaccaaagtat |
3414068 |
T |
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| Q |
220 |
tatcttcattgtccaacaccaaac |
243 |
Q |
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| T |
3414069 |
tatcttcattgtccaacacaaaac |
3414092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 3413476 - 3413691
Alignment:
| Q |
20 |
atcttcattgtccaaatcaaaatacacacacaatttagataaaccaacaaaaagaggaacaaatattgttatgaactatttttaagggtaaaagac---a |
116 |
Q |
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| T |
3413476 |
atcttcattgtccaaaacaaaatacacacacaatttagataaacaaatgaaaagaggaacaaatcttgttgtgaact---ttaaatggtagggggccaaa |
3413572 |
T |
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| Q |
117 |
aaagtgtagatgaaaataaagaggcggttgaagaattagactcggaataaa-acatatccgcaaagcaattttgcttttacgcacgacgagcgaaccaaa |
215 |
Q |
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| T |
3413573 |
aaaatgtacatgaaaataaagaggaaattgaagaaatggactcggaataaacatatatcggcaaagcaactttgcttttacgcacgacgagcgaacc-aa |
3413671 |
T |
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| Q |
216 |
gtattatcttcattgtccaa |
235 |
Q |
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| T |
3413672 |
gtattatcttcattgtccaa |
3413691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 3413426 - 3413490
Alignment:
| Q |
170 |
atatccgcaaagcaattttgcttttacgcacgacgagcgaaccaaagtattatcttcattgtccaa |
235 |
Q |
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| T |
3413426 |
atatcggcaaagcaactttgcttttacgcacgacgagcgaacc-aagtattatcttcattgtccaa |
3413490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 3413677 - 3413775
Alignment:
| Q |
20 |
atcttcattgtccaaatcaaaatacacacacaatttagataaaccaacaaaaagaggaacaaatattgttatgaactatttttaagggtaaaagacaaaa |
119 |
Q |
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|||||||||||||||| ||||||||||||| || |||||||||||| |||||| |||||||| || || |||||| |||| |||| || ||| ||||| |
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| T |
3413677 |
atcttcattgtccaaaacaaaatacacaca--atgtagataaaccaatgaaaagatgaacaaatcttattgtgaacttttttaaaggatagaaggcaaaa |
3413774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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