View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_high_4 (Length: 421)
Name: NF8860_high_4
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 43482625 - 43483009
Alignment:
| Q |
1 |
agaacttcaacgaaatcatggtggcattgcaattttcgccaaattcaccctcaacccaaagttaaacaaatcaaactacaaatgttttatatatttccag |
100 |
Q |
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| T |
43482625 |
agaacttcaacgaaatcatggtggcattgcaattttcgccaaattcaccctcaacccaaacttaaacaaatcaaactacaaatgttttatatatttccag |
43482724 |
T |
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| Q |
101 |
gtgaaaaggtagacattgacaagtggatgaggtagctaagaagtgatggcagggtaaactggttacagacctgacatatggccccgcacctatgttgcag |
200 |
Q |
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| T |
43482725 |
gtgaaaaggtagacattgacaagtggatgaggtagctaagaagtgatggcagggtaaactggttacagacctgacatatggccccgcacctatgttgcag |
43482824 |
T |
|
| Q |
201 |
ggcttgaaggtattaccttgtctgcaaattgcggcacatatccaatggcccaactcaaaatttgatacannnnnnnctcaaagttttggcaatacatcag |
300 |
Q |
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| T |
43482825 |
ggcttgaaggtattaccttgtctgcaaattgcggcacatatccaatggcccaactcaaaatttgatacatttttttctcaaagttttggaaatacatcag |
43482924 |
T |
|
| Q |
301 |
acatgaatcgtggatgtcattatcttgtgccagaaggtacgtgacattttcacccggttttagttattgaaagttgcatggattt |
385 |
Q |
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| T |
43482925 |
acatgaatcgtggatgtcattatcttgtgccagaaggtacgtgacattttcacccggttttagttattgaaagttgcatggattt |
43483009 |
T |
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