View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_high_5 (Length: 336)
Name: NF8860_high_5
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_high_5 |
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| [»] chr1 (16 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 11890878 - 11890557
Alignment:
| Q |
15 |
ttatacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaag |
114 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
11890878 |
ttatacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttggacttctcacattctttgaaatgtttctttgaag |
11890779 |
T |
|
| Q |
115 |
cataagcaaatggcttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaaggg |
214 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11890778 |
cataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaagtttgttccttggtttagctttgtaggtatgttgaaggg |
11890679 |
T |
|
| Q |
215 |
tgaacccttaggtggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagtcattaactgtgatggcatactttccattgatc |
314 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11890678 |
tgaacccttaggtggagcataaagggcagccttgcacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatc |
11890579 |
T |
|
| Q |
315 |
ttagttttaccgtaagccttga |
336 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
11890578 |
ttagttttaccgtaagccttga |
11890557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 336
Target Start/End: Complemental strand, 11881506 - 11881191
Alignment:
| Q |
21 |
ttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataag |
120 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11881506 |
ttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataag |
11881407 |
T |
|
| Q |
121 |
caaatggcttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacc |
220 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11881406 |
caaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacc |
11881307 |
T |
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| Q |
221 |
cttaggtggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagtcattaactgtgatggcatactttccattgatcttagtt |
320 |
Q |
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||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
11881306 |
cttaggtggagcatatagggcagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtt |
11881207 |
T |
|
| Q |
321 |
ttaccgtaagccttga |
336 |
Q |
| |
|
|| || |||||||||| |
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| T |
11881206 |
tttccataagccttga |
11881191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 39 - 336
Target Start/End: Complemental strand, 11903988 - 11903691
Alignment:
| Q |
39 |
ggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctttga |
138 |
Q |
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|||||||||| | || |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11903988 |
ggtggaggtggtgagttgtagaaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttga |
11903889 |
T |
|
| Q |
139 |
gcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag |
238 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903888 |
gcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag |
11903789 |
T |
|
| Q |
239 |
ggcagccttacacactgttgaaccatatttgacatagtcaaagtcattaactgtgatggcatactttccattgatcttagttttaccgtaagccttga |
336 |
Q |
| |
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|| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||| |
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| T |
11903788 |
ggtagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccataagccttga |
11903691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 36 - 336
Target Start/End: Original strand, 52819808 - 52820108
Alignment:
| Q |
36 |
ggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctt |
135 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||| ||| || || |||||||||| |||| ||||| |||||||| || ||||||||||| | |
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| T |
52819808 |
ggaggaggaggtgacttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcataatgcttcttagaagcatatgcgaatggcttagcct |
52819907 |
T |
|
| Q |
136 |
tgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcata |
235 |
Q |
| |
|
||||||| || || ||||||||||| ||||| | ||| | ||||| | || ||||| ||||||||||||||||| || | |||||||||||||| |
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| T |
52819908 |
tgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttagtaggtatgttgaagggagagtctttaggtggagcata |
52820007 |
T |
|
| Q |
236 |
aagggcagccttacacactgttgaaccatatttgacatagtcaaagtcattaactgtgatggcatactttccattgatcttagttttaccgtaagccttg |
335 |
Q |
| |
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|| || || ||||| ||||||||||| ||||||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52820008 |
tagtttggctttgcacaccacagaaccatattttacatagttaaagtttggaattgtgatggcatactttccattactcttagttttaccgtaagccttg |
52820107 |
T |
|
| Q |
336 |
a |
336 |
Q |
| |
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| |
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| T |
52820108 |
a |
52820108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11891007 - 11890953
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11891007 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
11890953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11881773 - 11881719
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11881773 |
tacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
11881719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11891139 - 11891085
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11891139 |
tacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
11891085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11881641 - 11881587
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11881641 |
tacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg |
11881587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11881905 - 11881851
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11881905 |
tacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg |
11881851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904102 - 11904048
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11904102 |
tacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg |
11904048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904234 - 11904180
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11904234 |
tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg |
11904180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904366 - 11904312
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
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| T |
11904366 |
tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg |
11904312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904498 - 11904444
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11904498 |
tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg |
11904444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904630 - 11904576
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
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| T |
11904630 |
tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg |
11904576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11904762 - 11904708
Alignment:
| Q |
18 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
72 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11904762 |
tacttataaaccggtgcaggaggtggaggtgatttgtagtagtatggagttggtg |
11904708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 11882710 - 11882673
Alignment:
| Q |
29 |
tggtgcgggaggtggaggtgatttgtagtagtaaggag |
66 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
11882710 |
tggtgagggaggtggaggtgatttgtaatagtaaggag |
11882673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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