View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_high_7 (Length: 277)
Name: NF8860_high_7
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 48341557 - 48341837
Alignment:
| Q |
1 |
atcatcaccaccgccttcacgactccgatgacgatgattctccccgtatccgccgccactacaacgtccgccgcctccgtcaccatgtaccttcctattt |
100 |
Q |
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| T |
48341557 |
atcatcaccaccgccttcacgactccgatgacgatgattctccccgtatccgccgccactacaacgtccgccgcctccgtcaccatgtaccttcctattt |
48341656 |
T |
|
| Q |
101 |
tccatcattttcctacacatatcttcgattcaaacccta----------nnnnnnnnnnnnatcattttctactgtttattgaaattgataattgcgagg |
190 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48341657 |
tccatcattttcctgcacatatcttcgattcaaaccctattttttttttttttttttttttatcattttctactgtttattgaaattgataattgcgagg |
48341756 |
T |
|
| Q |
191 |
ttctgactttaattattttatcacagtacaattcttgatagaactcgtataaaagtctaatgattaatgagacaattgttg |
271 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48341757 |
ttctgacttgaattattttatcacagtacaattcttgatagaactcgtagaaaagtctaatgattaatgagacaattgttg |
48341837 |
T |
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