View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_low_1 (Length: 602)
Name: NF8860_low_1
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Original strand, 53044023 - 53044586
Alignment:
| Q |
18 |
aaacagtgatgttcaggtccaaatttgattcttggcctcagacaactaatgcagcaatgcctgaagatggtcgtggcaaggtagcaggtgagttttaaat |
117 |
Q |
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| T |
53044023 |
aaacagtgatgttcaggtccaaatttgattcttggcctcagacaactaatgcagcaatgcctgaagatggccgtggcaaggtagcaggtgagttttaaat |
53044122 |
T |
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| Q |
118 |
aaactttaatgtaactagcctgaataggnnnnnnnnnnngttgttgaggggtattctgaataggtttcttcagcatcattttccctactgttatcttatt |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044123 |
aaactttaatgtaactagcctgaataggtttttttttt--ttgttgaggggtattctgaataggtttcttcagcatcattttccctactgttatcttatt |
53044220 |
T |
|
| Q |
218 |
ctaatattgtgtcttgtttccagcacttcttaaacgtcaaggattggatgtcaagggcctcgtgaaagctgatccagtaaaagaagaacctcaaccctac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044221 |
ctaatattgtgtcttgtttccagcacttcttaaacgtcaaggattggatgtcaagggcctcgtgaaagctgatccagtaaaagaagaacctcaaccctac |
53044320 |
T |
|
| Q |
318 |
attgactgcacgggacatttacaagtactcgaatacattttatatcaaataactcatcacaactgatatctcatgatgcaatttttatcagtattatatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044321 |
attgactgcacgggacatttacaagtactcgaatacattttatatcaaataactcatcgcaactgatatctcatgatgcaatttttatcagtattatatt |
53044420 |
T |
|
| Q |
418 |
taatttttcagtggtcttatatcccctatgtatttttgatttctcttagtgggagaatctttagaattccaatcactatattctcaaaactctaccccat |
517 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044421 |
taatttttcagtggtcttatatcccctatgta--tttgatttctcttagtgggagaatctttagaattccaatcactatattctcaaaactctaccccat |
53044518 |
T |
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| Q |
518 |
tctaaagatgatcatcaaaatgagaaacttaaatgcacaagagctatattctatcatatgcttcaaat |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53044519 |
tctaaagatgatcatcaaaatgagaaacttaaatgcacaagagctatattctatcatatgcttcaaat |
53044586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 15962953 - 15962845
Alignment:
| Q |
239 |
agcacttcttaaacgtcaaggattggatgtcaagggcctcgtgaaagctgatccagtaaaagaagaacctcaaccctacattgactgcacgggacattta |
338 |
Q |
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|||||| || |||||||||||| | |||||||||| || |||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||||||| |
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| T |
15962953 |
agcactcctgaaacgtcaaggagtaaatgtcaagggtctgttgaaagctgacgcagtaaaggaagaacctcaaccttacattgattgcactggacattta |
15962854 |
T |
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| Q |
339 |
caagtactc |
347 |
Q |
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|| |||||| |
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| T |
15962853 |
caggtactc |
15962845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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