View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8860_low_11 (Length: 262)

Name: NF8860_low_11
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8860_low_11
NF8860_low_11
[»] chr7 (2 HSPs)
chr7 (19-252)||(5897547-5897783)
chr7 (19-68)||(5897053-5897102)
[»] chr1 (6 HSPs)
chr1 (114-199)||(28108129-28108215)
chr1 (85-168)||(46916001-46916083)
chr1 (150-199)||(36979763-36979812)
chr1 (80-152)||(68997-69069)
chr1 (172-204)||(46878251-46878283)
chr1 (119-168)||(46518645-46518694)
[»] chr8 (2 HSPs)
chr8 (111-158)||(42456928-42456975)
chr8 (111-159)||(5920867-5920915)
[»] chr3 (3 HSPs)
chr3 (89-152)||(51380944-51381007)
chr3 (150-203)||(39028200-39028253)
chr3 (119-159)||(27844700-27844740)
[»] chr2 (5 HSPs)
chr2 (115-199)||(29699536-29699626)
chr2 (111-149)||(12037314-12037352)
chr2 (84-150)||(27249849-27249915)
chr2 (119-168)||(29923933-29923982)
chr2 (111-139)||(42013385-42013413)
[»] chr4 (3 HSPs)
chr4 (89-159)||(21512003-21512073)
chr4 (171-211)||(43148960-43149000)
chr4 (156-198)||(21512101-21512143)
[»] chr5 (3 HSPs)
chr5 (89-143)||(37283757-37283811)
chr5 (108-152)||(9379211-9379255)
chr5 (150-210)||(10315791-10315851)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 5897783 - 5897547
Alignment:
Q  19 agatgagctatcaggctggacaggcacaaggccaagctcaggttttcttaattaccttctctttaggaataatgttgctcacagtttattcgatgctagg 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || | ||||||||| |    
T  5897783 agatgagctatcaggctggacaggcccaaggccaagctcaggttttctttattaccttctctttaggaataatgttgttcacatttcactcgatgctaag 5897684  T
Q  119 aaacaccagtaatttatcaatataacttcatcggcaattaattgctgatgtgcatttacgtctttttctggtgtgtttcagtcttagttgaatac---ac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |     
T  5897683 aaacaccagtaatttatcaatataacttcatcggcaattaattgctgatgtgcatttacgtctttttctggtgtgtttcagccttagttgaatacaaaag 5897584  T
Q  216 ttttctctctttatagtgtgttaattttaagaataat 252  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5897583 ttttctctctttatagtgtgttaattttaagagtaat 5897547  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 5897102 - 5897053
Alignment:
Q  19 agatgagctatcaggctggacaggcacaaggccaagctcaggttttctta 68  Q
    ||||||||||| || |||||||||| ||||||||||||||||||||||||    
T  5897102 agatgagctatgagactggacaggcccaaggccaagctcaggttttctta 5897053  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 28108129 - 28108215
Alignment:
Q  114 ctaggaaacaccagtaatttatcaatataacttcatcggcaattaattgctgatgtgcatttacgtc-tttttctggtgtgtttcag 199  Q
    ||||||||||| ||||||||| ||||||||||||||||||| |||  | | ||||  |||||||||| |||||||||| ||||||||    
T  28108129 ctaggaaacactagtaatttaccaatataacttcatcggcagttagctaccgatgaacatttacgtcttttttctggtttgtttcag 28108215  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 46916083 - 46916001
Alignment:
Q  85 gaataatgttgctcacagtttattcgatgctaggaaacaccagtaatttatcaatataacttcatcggcaattaattgctgatg 168  Q
    ||||||||||| ||||| || | |||||| |||||||||||||||||||| |||||| | |||||||||| |||| ||| ||||    
T  46916083 gaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaatat-atttcatcggcagttaactgcagatg 46916001  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 36979812 - 36979763
Alignment:
Q  150 cggcaattaattgctgatgtgcatttacgtctttttctggtgtgtttcag 199  Q
    |||||||||||||| |||   |||||||||||||||||||||||||||||    
T  36979812 cggcaattaattgccgattaacatttacgtctttttctggtgtgtttcag 36979763  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 69069 - 68997
Alignment:
Q  80 tttaggaataatgttgctcacagtttattcgatgctaggaaacaccagtaatttatcaatataacttcatcgg 152  Q
    |||| ||| ||||||| ||||| || | || ||||||||| |||| ||||||||||||||||||| |||||||    
T  69069 tttatgaagaatgttgttcacacttcactcaatgctaggacacactagtaatttatcaatataacatcatcgg 68997  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 46878251 - 46878283
Alignment:
Q  172 atttacgtctttttctggtgtgtttcagtctta 204  Q
    |||||||||||||||||||||||||||||||||    
T  46878251 atttacgtctttttctggtgtgtttcagtctta 46878283  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 46518645 - 46518694
Alignment:
Q  119 aaacaccagtaatttatcaatataacttcatcggcaattaattgctgatg 168  Q
    |||||||||||||||| |||||||| | |||||||| |||| ||||||||    
T  46518645 aaacaccagtaatttaccaatataattccatcggcatttaactgctgatg 46518694  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 42456975 - 42456928
Alignment:
Q  111 atgctaggaaacaccagtaatttatcaatataacttcatcggcaatta 158  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  42456975 atgctaggaaacaccagtaatttaccaatataacctcatcggtaatta 42456928  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 5920915 - 5920867
Alignment:
Q  111 atgctaggaaacaccagtaatttatcaatataacttcatcggcaattaa 159  Q
    ||||||||||||||||||| |||| ||||||||  ||||||||| ||||    
T  5920915 atgctaggaaacaccagtactttaccaatataatctcatcggcagttaa 5920867  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 51380944 - 51381007
Alignment:
Q  89 aatgttgctcacagtttattcgatgctaggaaacaccagtaatttatcaatataacttcatcgg 152  Q
    ||||||| ||||| || | || |||||||||||||| ||||||||||||||||||| |||||||    
T  51380944 aatgttgttcacacttcactcaatgctaggaaacactagtaatttatcaatataacatcatcgg 51381007  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 39028200 - 39028253
Alignment:
Q  150 cggcaattaattgctgatgtgcatttacgtctttttctggtgtgtttcagtctt 203  Q
    ||||| |||| ||| ||||  |||||||||||||||||||||||||||||||||    
T  39028200 cggcagttaactgccgatgaacatttacgtctttttctggtgtgtttcagtctt 39028253  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 27844740 - 27844700
Alignment:
Q  119 aaacaccagtaatttatcaatataacttcatcggcaattaa 159  Q
    ||||| ||||||||||||||||||| |||||||||| ||||    
T  27844740 aaacatcagtaatttatcaatataatttcatcggcagttaa 27844700  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 29699626 - 29699536
Alignment:
Q  115 taggaaacaccagtaatttatcaatataacttcatcgg------caattaattgctgatgtgcatttacgtctttttctggtgtgtttcag 199  Q
    |||||||||| ||||||||| ||||||||| |||||||      || |||| ||| ||||  |||||||||||||||||||||||||||||    
T  29699626 taggaaacactagtaatttaccaatataacctcatcggtagtggcagttaactgccgatggacatttacgtctttttctggtgtgtttcag 29699536  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 12037314 - 12037352
Alignment:
Q  111 atgctaggaaacaccagtaatttatcaatataacttcat 149  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  12037314 atgctaggaaacaccagtaatttatcaatataacctcat 12037352  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 27249915 - 27249849
Alignment:
Q  84 ggaataatgttgctcacagtttattcgatgctaggaaacaccagtaatttatcaatataacttcatc 150  Q
    |||| ||||||| ||||| || | || ||| |||||||||| |||||||||||||||||||||||||    
T  27249915 ggaagaatgttgttcacacttcactcaatgttaggaaacactagtaatttatcaatataacttcatc 27249849  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 29923982 - 29923933
Alignment:
Q  119 aaacaccagtaatttatcaatataacttcatcggcaattaattgctgatg 168  Q
    ||||||||||||||||  |||||||| ||||||||| |||||||||||||    
T  29923982 aaacaccagtaatttactaatataacctcatcggcagttaattgctgatg 29923933  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 42013385 - 42013413
Alignment:
Q  111 atgctaggaaacaccagtaatttatcaat 139  Q
    |||||||||||||||||||||||||||||    
T  42013385 atgctaggaaacaccagtaatttatcaat 42013413  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 21512003 - 21512073
Alignment:
Q  89 aatgttgctcacagtttattcgatgctaggaaacaccagtaatttatcaatataacttcatcggcaattaa 159  Q
    ||||||| ||||| || | || |||||||||||||| | ||||||||||||||||||| ||||||| ||||    
T  21512003 aatgttgttcacacttcactcaatgctaggaaacactactaatttatcaatataactttatcggcagttaa 21512073  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 43148960 - 43149000
Alignment:
Q  171 catttacgtctttttctggtgtgtttcagtcttagttgaat 211  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  43148960 catttacgtttttttctggtgtgtttcagccttagttgaat 43149000  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 21512101 - 21512143
Alignment:
Q  156 ttaattgctgatgtgcatttacgtctttttctggtgtgtttca 198  Q
    |||| ||||||||  ||||||||||||||||||||||||||||    
T  21512101 ttaactgctgatggacatttacgtctttttctggtgtgtttca 21512143  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 37283811 - 37283757
Alignment:
Q  89 aatgttgctcacagtttattcgatgctaggaaacaccagtaatttatcaatataa 143  Q
    ||||||| ||||| || | || |||||||||||||| ||||||||||||||||||    
T  37283811 aatgttgttcacacttcactcaatgctaggaaacacgagtaatttatcaatataa 37283757  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 9379211 - 9379255
Alignment:
Q  108 tcgatgctaggaaacaccagtaatttatcaatataacttcatcgg 152  Q
    |||||||| | ||||  ||||||||||||||||||||||||||||    
T  9379211 tcgatgcttgaaaactacagtaatttatcaatataacttcatcgg 9379255  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 10315791 - 10315851
Alignment:
Q  150 cggcaattaattgctgatgtgcatttacgtctttttctggtgtgtttcagtcttagttgaa 210  Q
    |||||||||| ||| |||| ||||||||||||||||||| | |  ||||| ||||||||||    
T  10315791 cggcaattaactgccgatgggcatttacgtctttttctgatataattcagccttagttgaa 10315851  T

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