View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_low_12 (Length: 252)
Name: NF8860_low_12
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 35902241 - 35902449
Alignment:
| Q |
31 |
tcctagttctttatgatggtcgacgtgctctaaagtaatagaaaattgaaattctctaaataaaactagaaatatattggacataccttgatgaaattac |
130 |
Q |
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| T |
35902241 |
tcctagttctttatgatggtcgacgtgctctaaagtaatagaaaattgaaattctctaaataaaactagaaat----tggacataccttgatgaaattac |
35902336 |
T |
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| Q |
131 |
gttggatgagacgatcgataagaaacaaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaat |
230 |
Q |
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| T |
35902337 |
gttggatgagacgatcgataagaaacaaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaat |
35902436 |
T |
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| Q |
231 |
tccagtattatct |
243 |
Q |
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|||||| |||||| |
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| T |
35902437 |
tccagttttatct |
35902449 |
T |
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 37024571 - 37024484
Alignment:
| Q |
156 |
caaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagtattatct |
243 |
Q |
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|||||| || |||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||| |
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| T |
37024571 |
caaaaggatgtctttagagtactcaggatgaccttgaattcccataatgtgatctccatatctaaacatctcaattccagtcttatct |
37024484 |
T |
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