View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_low_13 (Length: 250)
Name: NF8860_low_13
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34317067 - 34317302
Alignment:
| Q |
1 |
cctcctcatccttgctaacaactctagaacctttgatcttaccatgtgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaat |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34317067 |
cctcctcatccttgctaacaa-----gaacctttgatcttaccatgcgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaat |
34317161 |
T |
|
| Q |
101 |
tgaatccaaatcagcattctctggcaatcttaactgtctccagaattttccatacaccctttcaactttgtgccaacgatcaccttttttctcagcttct |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34317162 |
tgaatccaaatcagcattctctggcaatcttaactgtctccagaattttccgtacaccctttcaactttgtgccaacgatcaccttttttctcagcttct |
34317261 |
T |
|
| Q |
201 |
ttcttcctttctccaataattctcagcatgccgttctctgc |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
34317262 |
ttcttcctttctccaataattctcagcatgccgttctctgc |
34317302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 33426516 - 33426290
Alignment:
| Q |
13 |
tgctaacaactctagaacctttgatcttaccatgtgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatc |
112 |
Q |
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||||||||| ||||| || ||| ||||||||||||||||||||| || ||| ||||||||||| ||||||||| | || ||||||| ||||||||||| |
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| T |
33426516 |
tgctaacaagtctagtacttttaatcttaccatgtgacaacttacgaagtgttaaagtaagaacaccattttccatcttggccttaaccgaatccaaatc |
33426417 |
T |
|
| Q |
113 |
agcattctctggcaatcttaactgtctccagaattttccatacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttct |
212 |
Q |
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| T |
33426416 |
agcattttcaggcaatctaaactgtctccaaaattttccatatgatctttcagctctatgccaacgatcaccttttttctcctcttctttctttctttct |
33426317 |
T |
|
| Q |
213 |
ccaataattctcagcatgccgttctct |
239 |
Q |
| |
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||||| | |||||||| || ||||||| |
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| T |
33426316 |
ccaatcactctcagcacgctgttctct |
33426290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 34304544 - 34304781
Alignment:
| Q |
2 |
ctcctcatccttgctaacaactctagaacctttgatcttaccatgtgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaatt |
101 |
Q |
| |
|
||||||||| ||||||||||||||| || ||| |||| | |||| ||||||||||||| ||||||||||||||| |||||||| | |||||||| | |
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| T |
34304544 |
ctcctcatcaatgctaacaactctagtacttttaatctgatcatgagacaacttattaagtgtcaaagtaagaacaccattttctatcttagccttcaca |
34304643 |
T |
|
| Q |
102 |
gaatccaaatcagcattctctggcaatcttaactgtctccagaattttccatacaccctttcaactttgtgccaacgatcaccttttttctcagcttctt |
201 |
Q |
| |
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||||||||||||||||| || |||||||| || || ||||| ||||||||||| |||||| || | ||||||||||||||||| ||||| |||||| |
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| T |
34304644 |
gaatccaaatcagcattttcaggcaatctaaattgcctccaaaattttccatatgatctttcagctctatgccaacgatcacctttcttctccacttctt |
34304743 |
T |
|
| Q |
202 |
tcttcctttctccaataattctcagcatgccgttctct |
239 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||||| |
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| T |
34304744 |
tcttcctttctccaataactctcagcacgctgttctct |
34304781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 34312241 - 34312043
Alignment:
| Q |
13 |
tgctaacaactctagaacctttgatcttaccatgtgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatc |
112 |
Q |
| |
|
||||||| | ||||| |||||| ||||| | |||||||||||||||| |||||||||||| || ||||||||| | |||||||||| ||| |||||||| |
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|
| T |
34312241 |
tgctaaccattctaggacctttagtcttatcttgtgacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatc |
34312142 |
T |
|
| Q |
113 |
agcattctctggcaatcttaactgtctccagaattttccatacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttc |
211 |
Q |
| |
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| |||| ||||||||||| || || ||||||||||||||||| ||||||||| |||||||| ||||||||| |||||| |||||||||||||||| |
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| T |
34312141 |
aacattttctggcaatctaaattgcctccagaattttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttcttcctttc |
34312043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 217
Target Start/End: Complemental strand, 34314649 - 34314475
Alignment:
| Q |
43 |
catgtgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatcagcattctctggcaatcttaactgtctcca |
142 |
Q |
| |
|
|||| |||| |||||||| ||||||| ||||||| ||||||||| |||||||| | ||||| |||||||||||||| |||||||| | ||||||||| |
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| T |
34314649 |
catgggacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacggaatcaaaatcagcattctccggcaatctaagctgtctcca |
34314550 |
T |
|
| Q |
143 |
gaattttccatacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttctccaat |
217 |
Q |
| |
|
|||||||||||||| ||||||| || | ||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
34314549 |
gaattttccatacatcctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaat |
34314475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 34322730 - 34322928
Alignment:
| Q |
13 |
tgctaacaactctagaacctttgatcttaccatgtgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatc |
112 |
Q |
| |
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||||||| | ||||| ||||||||||||| |||||||||||||||||| |||||||||||| || ||||||||| | |||||||| | |||||||||||| |
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| T |
34322730 |
tgctaaccattctaggacctttgatcttatcatgtgacaacttattaagtgtcaaagtaagtacaccattttccatcttagccttcactgaatccaaatc |
34322829 |
T |
|
| Q |
113 |
agcattctctggcaatcttaactgtctccagaattttccatacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttc |
211 |
Q |
| |
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| |||| || |||||||| || || ||||||||||| ||||| ||||||||| | |||||| ||||||||| |||||| |||||||||||||||| |
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| T |
34322830 |
aacattttcaggcaatctaaattgcctccagaatttcccataagatctttcaactctatgccaatgatcaccttgtttctcttcttctttcttcctttc |
34322928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 25651237 - 25651417
Alignment:
| Q |
59 |
aaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatcagcattctctggcaatcttaactgtctccagaattttccatacacc |
158 |
Q |
| |
|
|||||| ||||||||||| |||| |||| | || | |||||| |||||||||||| |||| ||||| ||||| | |||||||||||||||||| ||| | |
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| T |
25651237 |
aaatgttaaagtaagaacaccatcttccatctttgtcttaatcgaatccaaatcaacattttctggtaatctaagttgtctccagaattttccacacatc |
25651336 |
T |
|
| Q |
159 |
ctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttctccaataattctcagcatgccgttctct |
239 |
Q |
| |
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||||||||| | ||||||||||||| ||| ||||| |||||| |||||||||||||||| ||| |||| || ||||||| |
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| T |
25651337 |
ctttcaactctatgccaacgatcacttttgttctcctgttcttttttcctttctccaataactcttagcacgctgttctct |
25651417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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