View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8860_low_14 (Length: 249)

Name: NF8860_low_14
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8860_low_14
NF8860_low_14
[»] chr1 (3 HSPs)
chr1 (18-240)||(28341212-28341434)
chr1 (165-224)||(23233999-23234058)
chr1 (170-224)||(41998396-41998450)
[»] chr8 (4 HSPs)
chr8 (170-233)||(13105129-13105193)
chr8 (170-224)||(34873134-34873188)
chr8 (170-224)||(36035147-36035201)
chr8 (175-220)||(26261255-26261300)
[»] chr7 (1 HSPs)
chr7 (172-226)||(25672368-25672422)
[»] chr5 (4 HSPs)
chr5 (176-217)||(19647373-19647414)
chr5 (175-224)||(30208974-30209023)
chr5 (170-233)||(8241088-8241152)
chr5 (170-218)||(36422549-36422597)
[»] chr4 (2 HSPs)
chr4 (160-224)||(42381071-42381135)
chr4 (160-224)||(47929293-47929357)
[»] chr2 (1 HSPs)
chr2 (170-233)||(32854570-32854634)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 28341434 - 28341212
Alignment:
Q  18 aattttactatcaaccttatcatagcagaaacttctccttacatcaaccataataaccttcataccaatttttccattactaactttatcatcctgaaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28341434 aattttactatcaaccttatcatagcagaaacttctccttacatcaaccataataaccttcataccaatttttccattactaactttatcatcttgaaag 28341335  T
Q  118 gtttcaatgttaaaattaaacaccctatttcccacatcatcatagtagctatagcttacacattttaaatgtgaagaagtagggtacctgaggttcgaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  28341334 gtttcaatgttaaaattaaacaccctatttcccacatcatcatagtagctatagcttacacattttaaatgtggagaagtggggtacctgaggtttgaac 28341235  T
Q  218 cccgaccttgcatatagtattat 240  Q
    ||||||||| |||||||||||||    
T  28341234 cccgaccttacatatagtattat 28341212  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 23234058 - 23233999
Alignment:
Q  165 gctatagcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 224  Q
    |||| |||| ||||||| |||||||| |||||||||||  ||| ||||||||||||||||    
T  23234058 gctagagctcacacattataaatgtggagaagtagggtgtctggggttcgaaccccgacc 23233999  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 41998450 - 41998396
Alignment:
Q  170 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 224  Q
    |||| |||||||||||||||| |||||||||||  ||  ||||||||||||||||    
T  41998450 agctcacacattttaaatgtggagaagtagggtgtctagggttcgaaccccgacc 41998396  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 13105193 - 13105129
Alignment:
Q  170 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaacccc-gaccttgcatata 233  Q
    |||| |||||||||||||||| |||||| ||||  |||||||||||||||| | |||||||||||    
T  13105193 agctcacacattttaaatgtggagaagtggggtgtctgaggttcgaaccccggcccttgcatata 13105129  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 34873188 - 34873134
Alignment:
Q  170 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 224  Q
    |||| |||||||||||||||| |||||| ||||  | ||||||||||||||||||    
T  34873188 agctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacc 34873134  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 36035147 - 36035201
Alignment:
Q  170 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 224  Q
    |||| |||||||||||||||| |||||| ||||  | ||||||||||||||||||    
T  36035147 agctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacc 36035201  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 26261255 - 26261300
Alignment:
Q  175 acacattttaaatgtgaagaagtagggtacctgaggttcgaacccc 220  Q
    |||||||||||| |||||||||| || || ||||||||||||||||    
T  26261255 acacattttaaacgtgaagaagtgggatatctgaggttcgaacccc 26261300  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 25672368 - 25672422
Alignment:
Q  172 cttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacctt 226  Q
    |||||||||| ||||||||||||||||||||  |||||||| |||| || |||||    
T  25672368 cttacacattataaatgtgaagaagtagggtgtctgaggtttgaactccaacctt 25672422  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 19647373 - 19647414
Alignment:
Q  176 cacattttaaatgtgaagaagtagggtacctgaggttcgaac 217  Q
    |||||||||||| ||||||||||||||| | |||||||||||    
T  19647373 cacattttaaatatgaagaagtagggtatccgaggttcgaac 19647414  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 30208974 - 30209023
Alignment:
Q  175 acacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 224  Q
    ||||||||||||| || |||||| |||| || ||||||||||||||||||    
T  30208974 acacattttaaatatggagaagtggggtgcccgaggttcgaaccccgacc 30209023  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 8241152 - 8241088
Alignment:
Q  170 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccga-ccttgcatata 233  Q
    |||| |||||||||||||||| |||||| ||||  | | |||||||||||||| |||||||||||    
T  8241152 agctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccttgcatata 8241088  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 36422597 - 36422549
Alignment:
Q  170 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaacc 218  Q
    |||| |||||| || ||||||||||||||| ||| ||||||||||||||    
T  36422597 agctcacacatatttaatgtgaagaagtagtgtatctgaggttcgaacc 36422549  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 42381071 - 42381135
Alignment:
Q  160 tagtagctatagcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 224  Q
    |||| |||| |||| ||||| ||||| |||| |||||| ||||  ||||||||||||||||||||    
T  42381071 tagtggctaaagctcacacaatttaattgtggagaagtggggtgtctgaggttcgaaccccgacc 42381135  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 47929357 - 47929293
Alignment:
Q  160 tagtagctatagcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 224  Q
    |||| |||| |||| |||||||||||||||| |||||| ||||  | |||||||||||| |||||    
T  47929357 tagtggctagagctcacacattttaaatgtggagaagtggggtttccgaggttcgaacctcgacc 47929293  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 32854634 - 32854570
Alignment:
Q  170 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaacccc-gaccttgcatata 233  Q
    |||| |||||||||||||||| |||||||||||  | | |||||||||||| | |||||||||||    
T  32854634 agctcacacattttaaatgtggagaagtagggtgtccggggttcgaaccccggcccttgcatata 32854570  T

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