View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8860_low_19 (Length: 236)
Name: NF8860_low_19
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43725405 - 43725184
Alignment:
| Q |
1 |
atggttggcattgaagccaggtgaaatcggtttggaggtcgaaaatcatgtagaatttttgtggtggtcctccaactcctatttgtactaagaaattgct |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43725405 |
atggttggcattgaagccaagtgaaatcggtttggaggtcgaaaatcatgtagaatttttgtggtggtcctccaactccgatttgtactaagaaattgct |
43725306 |
T |
|
| Q |
101 |
ggttcctgtggttatgcctgggttcaacgaagcatttagttctaggctatagtagttcttgtgttgatgatgagtattatagagagatgcagctggatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43725305 |
ggttcctgtggttatgcctgggttcaacgaagcatttaggtctaagctatagtagttcttgtgttgatgatgagtattatagagagatgcagctggatat |
43725206 |
T |
|
| Q |
201 |
agtttgagcttgaaggaagaag |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
43725205 |
agtttgagcttgaaggaagaag |
43725184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University