View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_low_20 (Length: 235)
Name: NF8860_low_20
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 21125925 - 21126026
Alignment:
| Q |
1 |
tggagaaagttgctcgtcagccttataccaatgcgaacagataatcaataatattttgtccatttctggtaacgttaacgtaagtaccaagtaaacatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21125925 |
tggagaaagttgctcgtcagccttataccaatgcgaacagataatcaataatattttgtccatttctggtaacgttaacgtaagtaccaagtaatcatgt |
21126024 |
T |
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| Q |
101 |
ct |
102 |
Q |
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|| |
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| T |
21126025 |
ct |
21126026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 21146015 - 21146116
Alignment:
| Q |
1 |
tggagaaagttgctcgtcagccttataccaatgcgaacagataatcaataatattttgtccatttctggtaacgttaacgtaagtaccaagtaaacatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21146015 |
tggagaaagttgctcgtcagccttataccaatgcgaacagataatcaataatattttgtccatttctggtaacgttaacgtaagtaccaagtaatcatgt |
21146114 |
T |
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| Q |
101 |
ct |
102 |
Q |
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|| |
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| T |
21146115 |
ct |
21146116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 21126091 - 21126143
Alignment:
| Q |
167 |
gtaaattgcagtactatgacataagaaagaaatgtcaaggaccactgtgttat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21126091 |
gtaaattgcagtactatgacataagaaagaaatgtcaaggaccactgtgttat |
21126143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 21146181 - 21146233
Alignment:
| Q |
167 |
gtaaattgcagtactatgacataagaaagaaatgtcaaggaccactgtgttat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21146181 |
gtaaattgcagtactatgacataagaaagaaatgtcaaggaccactgtgttat |
21146233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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