View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_low_22 (Length: 213)
Name: NF8860_low_22
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 4818824 - 4818998
Alignment:
| Q |
16 |
taatactcggtttgcgaaaaaatacttggctaaatttattcatccacaaatccctttgtatttgatcctttgtaacctgggttctagtatactcaaatgc |
115 |
Q |
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| T |
4818824 |
taatactcggtttgcgaaaaaatacttggctaaatttattcatccacaaatccctttgtatttgatcctttgtaacctgggttctagtatactcaaatgc |
4818923 |
T |
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| Q |
116 |
gctttattaccgagtagccctttacacacgtcagtagccagcagcgcccttgtatcactggtatattttcttgaa |
190 |
Q |
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| T |
4818924 |
gctttattaccgagtagcccttaacacacgtcagtagccagcagcgcccttgtatcactggtatcttttcttgaa |
4818998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 4845208 - 4845260
Alignment:
| Q |
32 |
aaaaaatacttggctaaatttattcatccacaaatccctttgtatttgatcctt |
85 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
4845208 |
aaaaaatacttggctaa-ttgattcatccacaaatccctttgtatttgatcctt |
4845260 |
T |
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