View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8860_low_3 (Length: 484)
Name: NF8860_low_3
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 40891585 - 40891919
Alignment:
| Q |
9 |
agcagagaagagtttcaattagaaataagagtacaaaggatactcaacccatacaactcgaaaagggtttatatgaagagcaatgctagctagcaggact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | |
|
|
| T |
40891585 |
agcagagaagagtttcaattagaaataagagtacaaaggatactcaacccatacaactcgaagagggtttatatgaagagcaatgttagctagcaggatt |
40891684 |
T |
|
| Q |
109 |
caataacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatgggggag-agagaataaaagcaatgttgcacattcttcatccaagg |
207 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40891685 |
caataacccacgacaacaaacgacgttgaaatcaacggatagcatacaatacatggggggggagagaataaaagcaatgttgcacattcttcatccaagg |
40891784 |
T |
|
| Q |
208 |
gttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtgccacaaacaattttcttataatgaattctgtgggaaaaacaatgtggaagatttct |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40891785 |
gttatattggtgtcgtgcgttttcgtgcttgtattgttgtcgtgccacaaacaattttcttataatgaattctgtgggaaaaacaatgtggaagatttct |
40891884 |
T |
|
| Q |
308 |
caatttttcccctgtatatcgcacctccaaaagtc |
342 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40891885 |
caatttttcccctgtatatcgcacccccaaaagtc |
40891919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 120 - 254
Target Start/End: Complemental strand, 3450207 - 3450073
Alignment:
| Q |
120 |
gacaacacacgacgttgaaatcaatggatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatccaagggttatattggtg |
219 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
3450207 |
gacaacacacgacgttggaatcaacggatagcatacactacatgggggagagagaataaaagcaatgctgcacattattcatccaagggttatattagtg |
3450108 |
T |
|
| Q |
220 |
tcgtgtgttttcgtgcttgtattggtgtcgtgcca |
254 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
3450107 |
tcgtgcgttttcgtgtttgtattggtgtcgtgcca |
3450073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 366 - 467
Target Start/End: Original strand, 40891938 - 40892039
Alignment:
| Q |
366 |
aaacaatgccttacgatccaatccataggatctacatgattgtggccaagctaatgacaaccaaagaaaacaaataaatggagccaactgcacagcattc |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40891938 |
aaacaatgccttacgatccaatccataggatctacattattgtggccaagcaaatgacaaccaaagaaaacaaataaatggagccaactgcacagcattc |
40892037 |
T |
|
| Q |
466 |
ct |
467 |
Q |
| |
|
|| |
|
|
| T |
40892038 |
ct |
40892039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 34254516 - 34254388
Alignment:
| Q |
127 |
cacgacgttgaaatcaatggatagcatacaattcatgggggagagaga-ataaaagcaatgttgcacattcttcatccaagggttatattggtgtcgtgt |
225 |
Q |
| |
|
|||||||||| |||||| || ||| ||||||| || |||||||||||| | |||||||||| |||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
34254516 |
cacgacgttggaatcaacgggtaggatacaatacacgggggagagagagaaaaaagcaatgctgcacatttttcatccaagggctatatcattgtcgtgt |
34254417 |
T |
|
| Q |
226 |
gttttcgtgcttgtattggtgtcgtgcca |
254 |
Q |
| |
|
|| ||| |||||| |||||||||||||| |
|
|
| T |
34254416 |
gtattcaggcttgtgttggtgtcgtgcca |
34254388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 26715392 - 26715224
Alignment:
| Q |
84 |
aagagcaatgctagctagcaggactcaa-taacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatggg-ggagagagaataaaag |
181 |
Q |
| |
|
||||||| ||||| ||||| ||||||| | |||||||||||||||||| || |||| | | || ||||||||| |||||| ||||||||||| ||| |
|
|
| T |
26715392 |
aagagcagtgctatttagcacgactcaaatgacccacgacaacacacgagattcgaatcgacgaatggcatacaatacatgggaggagagagaattaaaa |
26715293 |
T |
|
| Q |
182 |
caatgttgcacattcttcatccaagggttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtg |
251 |
Q |
| |
|
|| || |||||| || | ||||||||||||| |||||||| ||| |||||| |||| | |||||||| |
|
|
| T |
26715292 |
cagtgctgcaca-tcattatccaagggttatgcgtgtgtcgtgcgttctcgtgcatgtaattgtgtcgtg |
26715224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 105 - 254
Target Start/End: Complemental strand, 10505648 - 10505507
Alignment:
| Q |
105 |
gactcaataacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatcca |
204 |
Q |
| |
|
|||||||| ||| |||||||||||| | |||| ||||||||||||||||||||| ||| |||| | |||||||||||| ||||||| |||||||| |
|
|
| T |
10505648 |
gactcaatgaccaacgacaacacaccatgttggaatcaatggatagcatacaatacattgggg-----ggataaaagcaatgccgcacattattcatcca |
10505554 |
T |
|
| Q |
205 |
agggttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtgcca |
254 |
Q |
| |
|
||| |||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
10505553 |
aggattatatcaatgtcg---catttcgtgtttgtattggtgtcgtgcca |
10505507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 633816 - 633924
Alignment:
| Q |
146 |
gatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatccaa-gggttatattggtgtcgtgtgttttcgtgcttgtattgg |
244 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||| ||| ||| ||||| ||||||||| ||||| | |||||||||| ||||||||||||| |||| |
|
|
| T |
633816 |
gatatcatacaatatacgggggagagagaataaaaaaaatcttgtacattattcatccaatgggtttaactggtgtcgtgcgttttcgtgcttg-attga |
633914 |
T |
|
| Q |
245 |
tgtcgtgcca |
254 |
Q |
| |
|
|||||||||| |
|
|
| T |
633915 |
tgtcgtgcca |
633924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 30622053 - 30622097
Alignment:
| Q |
11 |
cagagaagagtttcaattagaaataagagtacaaaggatactcaa |
55 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
30622053 |
cagagaagagttccaattcgaaataagagtacaaagaatactcaa |
30622097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 39606414 - 39606501
Alignment:
| Q |
114 |
acccacgacaacacacgacgttgaaatcaatggatagcatacaattcatgggggagagagaataaaagcaatgttgcacattcttcatc |
202 |
Q |
| |
|
||||| |||||||||| | | |||||| | || ||||||||||| |||||||| |||| ||||||||||||| |||||||| |||||| |
|
|
| T |
39606414 |
acccatgacaacacacaatttcgaaatcgacggctagcatacaatacatggggg-gagaaaataaaagcaatgctgcacattattcatc |
39606501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 9522212 - 9522378
Alignment:
| Q |
86 |
gagcaatgctagctagcaggactcaa-taacccacgacaacacacgacgttgaaatcaatggatagcatacaattcatggg-ggagagagaataaaagca |
183 |
Q |
| |
|
||||| ||||| ||||| ||||||| | |||||||||||||||||| || ||||| |||| ||||||||| |||||| ||||||||||| |||||| |
|
|
| T |
9522212 |
gagcagtgctatttagcacgactcaaatgacccacgacaacacacgagattcaaatcgtcggatggcatacaatacatgggaggagagagaattaaagca |
9522311 |
T |
|
| Q |
184 |
atgttgcacattcttcatccaagggttatattggtgtcgtgtgttttcgtgcttgtattggtgtcgtg |
251 |
Q |
| |
|
|| |||||| || | |||||||| |||| |||||||| ||| |||||| |||| | |||||||| |
|
|
| T |
9522312 |
gtgctgcaca-tcataatccaaggtttatgcgcgtgtcgtgcgttctcgtgcatgtaattgtgtcgtg |
9522378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University