View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_low_4 (Length: 447)
Name: NF8860_low_4
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 21 - 429
Target Start/End: Complemental strand, 11890534 - 11890118
Alignment:
| Q |
21 |
tgtcacttcaacaacagcacctgtcccataacaaatttgaatttagacaaattgaaatataattgtttttaaaacatattatattggagagtgttattat |
120 |
Q |
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| T |
11890534 |
tgtcacttcaacaacagcacctgtcccataacaaatttgaatttagacaaatagaaatataattgtttttaaaacataatatattggagagtgttattat |
11890435 |
T |
|
| Q |
121 |
aaagaagctcactaaactatcattgtcaaaccgaatctttatattaggcaggattattaaattttaatgaggtaaatgatatat-------gtttatttg |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
11890434 |
aaagaagctcactaaactatcattttcaaaccgaatctttatattaggcaggattattaaattttaatgaggtaaatgatatatcatatatgttaatttg |
11890335 |
T |
|
| Q |
214 |
atatatcaattgttttctttattggacaaggagagacctaaattaagtgtttgtataattt-taagaaacaaagatgttaataaaaacatgtctatatga |
312 |
Q |
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||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11890334 |
atatatcaattgtttactttattggacatggagaaacctaaattaagtgtttgtataatttctaagaaacaaagatgttaataaaaacatgtctatatga |
11890235 |
T |
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| Q |
313 |
atctcattactgaaacttgcagtttagttgtaatggtattgagaaactacgagccaatagtgatttacataaaatatataaaaatgaaaggattgagaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
11890234 |
atctcattactgaaacttgcagtttagttgtaatggtattgagaaactacgagccaatagtgatgtacataaaatctataaaaatgaaagaattgagaaa |
11890135 |
T |
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| Q |
413 |
tgtaatgtgatgtacct |
429 |
Q |
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| T |
11890134 |
tgtaatgtgatgtacct |
11890118 |
T |
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