View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8860_low_7 (Length: 340)
Name: NF8860_low_7
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8860_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 54819133 - 54819438
Alignment:
| Q |
20 |
actagtacgtagataaagtataaatcatgggatccccactgctcagcaaaagagatattcaacaacgaaaaaggaaaagtaaacaactaatctttggagt |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54819133 |
actagtacgtagataaaggataaatcatgggatccccactgctcagcaaaagagatattcaacaacgaaaaaggaaaagtaaacaactaatctttggagt |
54819232 |
T |
|
| Q |
120 |
agaatatcaaacattgattctcaccaacaataagttaacaactccttacacaatttgagtatcaaataccaacttatgtatagtttgtttacagaacaaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54819233 |
agaatatcaaacattgattctcaccaacaataagttaacaactccttacacaatttgagtatcaaataccaacttatctatagtttgtttacagaacaaa |
54819332 |
T |
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| Q |
220 |
ccaatacacgcattacaatttacaaatatatccaaactaaattgatccatattatttatgacttgaaattaacacttcttcagcctgattacataatatt |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54819333 |
ccaatacacgcattacaatttacaaatatatcccaactaaattgatccatattatttatgacttgaaattaacacttcttcagcctgattacataatatt |
54819432 |
T |
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| Q |
320 |
gttcat |
325 |
Q |
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|||||| |
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| T |
54819433 |
gttcat |
54819438 |
T |
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