View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8860_low_9 (Length: 325)

Name: NF8860_low_9
Description: NF8860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8860_low_9
NF8860_low_9
[»] scaffold0009 (1 HSPs)
scaffold0009 (26-312)||(5225-5520)


Alignment Details
Target: scaffold0009 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 26 - 312
Target Start/End: Complemental strand, 5520 - 5225
Alignment:
Q  26 actccatggaaagatttcatagtcatagattgttcgagaattgctcctgcaaactatacatttgaaaa-tattagtat--------caaaatcaatgttg 116  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||        ||||||||||||||    
T  5520 actccatggaaagatgtcatagtcatagattgttcaagaattgctcctgcaaactatacatttgaaaaatattagtataactatttcaaaatcaatgttg 5421  T
Q  117 gtgcaataaatcaagaaaatatactaaattcaaggaaaaaacggtatcaaatacattacattagtgctcgtgactttctccaactgtacaaaatcctctt 216  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5420 gtgcaataaatcaagaaaagatattaaattcaaggaaaaaagggtatcaaatacattacattagtgctcgtgactttctccaactgtgcaaaatcctctt 5321  T
Q  217 gagcaaaattagtgctcgtgactttcactaaacaaaagaaaaagaaaataatattgatcattttcaagactcacttctcaaacaattagagtatta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||    
T  5320 gagcaaaattagtgctcgtgactttcactaaacaaaagaaaaagaaaataatactaatcattttcgagactcacttctcaaacaattagagtatta 5225  T

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