View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_high_1 (Length: 563)
Name: NF8861_high_1
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 148 - 550
Target Start/End: Original strand, 9221714 - 9222116
Alignment:
| Q |
148 |
atatattcattaattttacaacattattcatgttaacagaaatggttgcataccagtctcatgaagggttccaagaagagcaatggctccataaacatat |
247 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9221714 |
atatattcattcattttataacattattcatgttaacagaaatagttgcataccagtctcatgaagggttccaagaagagcaatggctccataaacatat |
9221813 |
T |
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| Q |
248 |
caatattcctgaattaggcacaaaaatgtatgtcattaaactgtaagaaatcttgatcagttgaaaaaccacaatgatttaaattgttgttttcatcctt |
347 |
Q |
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| T |
9221814 |
caatattcctgaattaggcacaaaaatgtatgtcattaaactgtaagcaatcttgattagttgaaaaaccacaatgatttaaa-tgttgttttcatcctt |
9221912 |
T |
|
| Q |
348 |
ctattttgggaaaaccgccgttttgctccccctatttctaatcataaaattttggtccccc-tttcatttgatgacgtactaataaattgttcactttaa |
446 |
Q |
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| T |
9221913 |
ctattttgggaaaaccgccgttttgctccccctatttctaatcatagaattttggtcccccgtttcatttgatgacgtactaataaattgttcattctaa |
9222012 |
T |
|
| Q |
447 |
accttttgtatcatttcaattgatcttcttttgaccatgtatgtttggtcacgacttagtttaagcctctacttttgacaactcaacaattaagttttcg |
546 |
Q |
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| T |
9222013 |
accttttgtatcatttcaattgatcttcttttgactatgtatgtttggtcacgacttagtttaagcctctacttttgacgactcaacaattaagttttcg |
9222112 |
T |
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| Q |
547 |
tttc |
550 |
Q |
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|||| |
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| T |
9222113 |
tttc |
9222116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 9221580 - 9221675
Alignment:
| Q |
16 |
tctttttcccttattcccatattctgatcctgttaatgaacttatcttcaagatctcttggacacttgccttcattttctgcatcaggggacacat |
111 |
Q |
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| T |
9221580 |
tctttttcccttattcccatattctgatcctgttaatgaacttatcttcaagatctcttggacacttgccttcattttctgcatcaggggacacat |
9221675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 10565644 - 10565594
Alignment:
| Q |
428 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttctttt |
478 |
Q |
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| T |
10565644 |
aataaattgttcactctcaacctcttgtatcatttcaattgatcttctttt |
10565594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 493
Target Start/End: Complemental strand, 33333904 - 33333839
Alignment:
| Q |
428 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttcttttgaccatgtatgtttg |
493 |
Q |
| |
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| T |
33333904 |
aataaattgtttacttccaacctcttgtatcatttcaattgatcttcttttaactatgtatatttg |
33333839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 33971160 - 33971208
Alignment:
| Q |
432 |
aattgttcactttaaaccttttgtatcatttcaattgatcttcttttga |
480 |
Q |
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||||||||||| ||| || || |||||||||||||||||||||||||| |
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| T |
33971160 |
aattgttcactctaatccccttttatcatttcaattgatcttcttttga |
33971208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 50815184 - 50815234
Alignment:
| Q |
428 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttctttt |
478 |
Q |
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||||||||||||| ||| |||||||| |||||||| ||||||||||||||| |
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| T |
50815184 |
aataaattgttcattttcaaccttttatatcattttaattgatcttctttt |
50815234 |
T |
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