View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8861_high_12 (Length: 304)

Name: NF8861_high_12
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8861_high_12
NF8861_high_12
[»] chr4 (19 HSPs)
chr4 (90-245)||(52673147-52673306)
chr4 (93-245)||(29544114-29544270)
chr4 (93-244)||(46079292-46079447)
chr4 (149-188)||(1208706-1208745)
chr4 (148-199)||(30643603-30643654)
chr4 (150-197)||(31455907-31455954)
chr4 (146-192)||(51853502-51853548)
chr4 (146-199)||(5052117-5052170)
chr4 (159-192)||(53176875-53176908)
chr4 (146-237)||(29693187-29693276)
chr4 (98-130)||(46079443-46079475)
chr4 (100-199)||(11077820-11077923)
chr4 (149-191)||(40202260-40202302)
chr4 (162-192)||(44015437-44015467)
chr4 (162-191)||(19473076-19473105)
chr4 (162-199)||(50041839-50041876)
chr4 (162-199)||(50049061-50049098)
chr4 (94-146)||(9116198-9116250)
chr4 (161-189)||(29724373-29724401)
[»] chr1 (21 HSPs)
chr1 (91-241)||(48914935-48915089)
chr1 (91-244)||(48915127-48915282)
chr1 (91-228)||(48915326-48915467)
chr1 (90-245)||(50539677-50539836)
chr1 (90-245)||(19456260-19456418)
chr1 (93-227)||(48843377-48843504)
chr1 (102-227)||(27907704-27907822)
chr1 (146-245)||(24671139-24671238)
chr1 (149-245)||(5398034-5398130)
chr1 (164-227)||(27032326-27032389)
chr1 (146-199)||(19431399-19431452)
chr1 (146-197)||(17923857-17923908)
chr1 (91-199)||(51748581-51748682)
chr1 (91-191)||(26478599-26478703)
chr1 (93-191)||(49177432-49177534)
chr1 (146-200)||(3950304-3950358)
chr1 (150-199)||(11872201-11872250)
chr1 (163-192)||(39004654-39004683)
chr1 (146-199)||(46325599-46325652)
chr1 (146-191)||(49315743-49315788)
chr1 (149-197)||(15106239-15106287)
[»] chr7 (22 HSPs)
chr7 (91-241)||(2628386-2628540)
chr7 (93-245)||(9488721-9488878)
chr7 (91-227)||(46425278-46425407)
chr7 (90-227)||(18867887-18868017)
chr7 (92-244)||(16876678-16876823)
chr7 (93-227)||(32279246-32279382)
chr7 (91-199)||(34328134-34328235)
chr7 (164-244)||(23185929-23186009)
chr7 (146-199)||(33884052-33884105)
chr7 (147-192)||(37685200-37685245)
chr7 (148-192)||(43368497-43368541)
chr7 (146-227)||(42971652-42971733)
chr7 (150-186)||(7352786-7352822)
chr7 (146-188)||(11369064-11369106)
chr7 (159-192)||(15667904-15667937)
chr7 (162-199)||(42266449-42266486)
chr7 (98-130)||(16876819-16876851)
chr7 (94-146)||(23185867-23185918)
chr7 (98-130)||(23186005-23186037)
chr7 (151-199)||(33747985-33748033)
chr7 (98-126)||(34328072-34328100)
chr7 (163-199)||(42691095-42691131)
[»] chr8 (11 HSPs)
chr8 (91-244)||(4834920-4835077)
chr8 (94-227)||(33938556-33938682)
chr8 (90-146)||(16467674-16467730)
chr8 (94-146)||(16499773-16499825)
chr8 (162-199)||(20896212-20896249)
chr8 (94-146)||(16508698-16508750)
chr8 (159-221)||(41474300-41474362)
chr8 (164-245)||(16467582-16467663)
chr8 (162-199)||(44132898-44132935)
chr8 (98-130)||(16508846-16508878)
chr8 (93-137)||(29768303-29768347)
[»] chr3 (18 HSPs)
chr3 (96-245)||(10688591-10688744)
chr3 (91-192)||(47548872-47548977)
chr3 (91-245)||(39994174-39994321)
chr3 (93-219)||(50700026-50700151)
chr3 (90-244)||(4037125-4037272)
chr3 (93-227)||(49279490-49279616)
chr3 (94-227)||(11233507-11233633)
chr3 (95-146)||(34272407-34272458)
chr3 (146-197)||(39485479-39485530)
chr3 (164-227)||(39972993-39973056)
chr3 (98-146)||(39350750-39350798)
chr3 (91-122)||(39973082-39973113)
chr3 (146-179)||(132151-132184)
chr3 (162-199)||(20345080-20345117)
chr3 (146-199)||(46348401-46348454)
chr3 (98-130)||(4037097-4037129)
chr3 (152-188)||(42466972-42467008)
chr3 (98-130)||(49279445-49279477)
[»] chr2 (18 HSPs)
chr2 (146-254)||(39728960-39729068)
chr2 (91-253)||(6752024-6752190)
chr2 (91-236)||(41069623-41069772)
chr2 (91-255)||(11226119-11226279)
chr2 (90-245)||(31750447-31750604)
chr2 (91-245)||(15141863-15142010)
chr2 (93-244)||(23395917-23396063)
chr2 (119-199)||(36562721-36562802)
chr2 (94-219)||(19037010-19037128)
chr2 (146-199)||(32832602-32832655)
chr2 (164-227)||(3496805-3496868)
chr2 (152-199)||(8209322-8209369)
chr2 (148-197)||(13477700-13477749)
chr2 (159-192)||(33433440-33433473)
chr2 (162-191)||(38529905-38529934)
chr2 (163-191)||(8044317-8044345)
chr2 (98-130)||(19037168-19037200)
chr2 (98-130)||(39707503-39707535)
[»] chr5 (20 HSPs)
chr5 (94-232)||(2651618-2651751)
chr5 (91-255)||(34928767-34928935)
chr5 (94-237)||(22658819-22658965)
chr5 (91-146)||(37480357-37480412)
chr5 (94-188)||(14151895-14151993)
chr5 (90-206)||(27554872-27554992)
chr5 (146-199)||(33953157-33953210)
chr5 (146-199)||(19824613-19824666)
chr5 (20-68)||(25089454-25089502)
chr5 (146-192)||(22029859-22029905)
chr5 (91-227)||(37515524-37515652)
chr5 (91-146)||(22473611-22473665)
chr5 (146-197)||(33922871-33922922)
chr5 (149-199)||(31882600-31882650)
chr5 (146-199)||(2630808-2630861)
chr5 (148-189)||(18623597-18623638)
chr5 (257-286)||(25089414-25089443)
chr5 (257-286)||(25147383-25147412)
chr5 (20-68)||(25147423-25147472)
chr5 (146-199)||(42321089-42321142)
[»] chr6 (13 HSPs)
chr6 (90-244)||(9928245-9928392)
chr6 (91-244)||(22469683-22469829)
chr6 (146-192)||(457685-457731)
chr6 (164-244)||(31743844-31743922)
chr6 (164-244)||(7506616-7506696)
chr6 (146-199)||(28963599-28963652)
chr6 (98-130)||(22469655-22469687)
chr6 (165-199)||(6139347-6139381)
chr6 (146-191)||(3037383-3037428)
chr6 (150-191)||(8585739-8585780)
chr6 (162-199)||(28067341-28067378)
chr6 (94-146)||(31743933-31743986)
chr6 (146-199)||(9549395-9549452)
[»] scaffold0176 (2 HSPs)
scaffold0176 (93-227)||(15092-15219)
scaffold0176 (100-133)||(15058-15091)
[»] scaffold0289 (1 HSPs)
scaffold0289 (159-192)||(20321-20354)
[»] scaffold0085 (1 HSPs)
scaffold0085 (162-191)||(31608-31637)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 52673147 - 52673306
Alignment:
Q  90 cgggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattt 185  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    ||||||||||| ||||||||| |||||||||||||||||    
T  52673147 cgggaaatacttgggtgccatagttttttggtgtcattggtgacataggttcattttagatgagagagaatgatgaatgaataattaaaataaattattt 52673246  T
Q  186 agatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
     |||||| ||||||||||||| |||||||||||||| |||||| |||||||| |||||||    
T  52673247 tgatgagagagaatatgttggtaagagagagatagacacaaaaatatcaatgacaccaaa 52673306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 29544114 - 29544270
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattatttaga 188  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||    |||||| |||| | ||||||||||||||||||||||||||||    
T  29544114 gaaatacttgggtgtcatagttttttggtgccattggtgacatatgttcattttagatgagagaaaatgataaatgaatgattaaaataaattatttaga 29544213  T
Q  189 tgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    |||  ||||||  ||||  || ||||||||||| ||||| || ||||||||||||||    
T  29544214 tgatagagaatgagttgttaatagagagatagacacaaaggtgtcaatggcaccaaa 29544270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 46079292 - 46079447
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattatttaga 188  Q
    ||||||||||| || ||||||||||||||| ||||| | ||||| |||||||||    ||||||||||| | ||||||||||||||||||||||||||||    
T  46079292 gaaatacttggatgacatagttttttggtgccattgatgacataggttcattttagatgagagagaatgatcaatgaatgattaaaataaattatttaga 46079391  T
Q  189 tgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    |||| ||||||  ||||  |||||| ||||||| ||||| ||   |||||||||||    
T  46079392 tgagagagaatgagttgttaagagacagatagacacaaatgtgctaatggcaccaa 46079447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 1208706 - 1208745
Alignment:
Q  149 gagagaatggtgaatgaatgattaaaataaattatttaga 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  1208706 gagagaatgatgaatgaatgattaaaataaattatttaga 1208745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 30643603 - 30643654
Alignment:
Q  148 agagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||| |||| || ||||||||||||||||||||||||||||||| ||||||    
T  30643603 agagataatgatggatgaatgattaaaataaattatttagatgagagagaat 30643654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 31455907 - 31455954
Alignment:
Q  150 agagaatggtgaatgaatgattaaaataaattatttagatgagcgaga 197  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  31455907 agagaatgaagaatgaatgattaaaataaattatttagatgagagaga 31455954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 51853548 - 51853502
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgag 192  Q
    |||||||||||| ||||||||| |||||||||| |||||||||||||    
T  51853548 tgagagagaatgttgaatgaataattaaaataacttatttagatgag 51853502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 5052170 - 5052117
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||| | ||| ||||||||||||||||||||| |||||| ||||||    
T  5052170 tgagagagaatgataaataaatgattaaaataaattattttgatgagagagaat 5052117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 53176908 - 53176875
Alignment:
Q  159 tgaatgaatgattaaaataaattatttagatgag 192  Q
    ||||||||||||||||||||||||||||||||||    
T  53176908 tgaatgaatgattaaaataaattatttagatgag 53176875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 29693276 - 29693187
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatg 237  Q
    |||||||||||| | ||| ||| |||||||||||||||||| || || || |||||||||  |  ||||||||||| ||||||||| |||||    
T  29693276 tgagagagaatgataaataaataattaaaataaattatttaaataagagataatatgttgtta--agagagatagacacaaaagtaccaatg 29693187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 46079475 - 46079443
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggt 130  Q
    |||||||||||||||||||||||||||||||||    
T  46079475 acttgggtgccatagttttttggtgtcattggt 46079443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 11077820 - 11077923
Alignment:
Q  100 ttgggtgccatagttttttggtgtcattggtaacataagttcattttga----gagagaatggtgaatgaatgattaaaataaattatttagatgagcga 195  Q
    ||||||| |||||||||| |||| |||||||  ||| |||||||||||     ||||||||| |  ||||||||||||||  | ||||||||||||| ||    
T  11077820 ttgggtgacatagtttttgggtgacattggtggcattagttcattttggatgggagagaatgatctatgaatgattaaaaatagttatttagatgagaga 11077919  T
Q  196 gaat 199  Q
    ||||    
T  11077920 gaat 11077923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 40202260 - 40202302
Alignment:
Q  149 gagagaatggtgaatgaatgattaaaataaattatttagatga 191  Q
    |||| |||| ||||||||| |||||||||||||||||||||||    
T  40202260 gagataatgatgaatgaattattaaaataaattatttagatga 40202302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 192
Target Start/End: Original strand, 44015437 - 44015467
Alignment:
Q  162 atgaatgattaaaataaattatttagatgag 192  Q
    |||||||||||||||||||||||||||||||    
T  44015437 atgaatgattaaaataaattatttagatgag 44015467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Original strand, 19473076 - 19473105
Alignment:
Q  162 atgaatgattaaaataaattatttagatga 191  Q
    ||||||||||||||||||||||||||||||    
T  19473076 atgaatgattaaaataaattatttagatga 19473105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 50041839 - 50041876
Alignment:
Q  162 atgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  50041839 atgaatgattaaaataaattattttgatgagagagaat 50041876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 50049061 - 50049098
Alignment:
Q  162 atgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  50049061 atgaatgattaaaataaattattttgatgagagagaat 50049098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 9116198 - 9116250
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt 146  Q
    ||||| |||||||||||| ||||||||| |||||| | ||||| |||||||||    
T  9116198 aaatatttgggtgccataattttttggtctcattgatgacataggttcatttt 9116250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 29724373 - 29724401
Alignment:
Q  161 aatgaatgattaaaataaattatttagat 189  Q
    |||||||||||||||||||||||||||||    
T  29724373 aatgaatgattaaaataaattatttagat 29724401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 48914935 - 48915089
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    ||||||||||| |||||||||||||||||||||||||||     
T  48914935 gggaaatacttgggtgccatagtttttttgtgacattggtgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattatttt 48915034  T
Q  187 gatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcac 241  Q
    |||||| ||||||  ||||  |||||||||||||| |||||||||||||||||||    
T  48915035 gatgagagagaatgagttgttaagagagagatagacacaaaagtatcaatggcac 48915089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 48915127 - 48915282
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt-ga-gagagaatggtgaatgaatgattaaaataaattatttaga 188  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||| || ||||||||| ||||||||||||||||||||||||||| ||    
T  48915127 gggaaatacttgggtgccatagtttttttgtgacattggtgacataggttcattttagatgagagaatgatgaatgaatgattaaaataaattattttga 48915226  T
Q  189 tgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    |||| ||||||  ||||  |||||||||||||| ||||||||||||||||||||||    
T  48915227 tgagagagaatgagttgttaagagagagatagacacaaaagtatcaatggcaccaa 48915282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 48915326 - 48915467
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    ||||||||||| |||||||||||||||||||||||||||     
T  48915326 gggaaatacttgggtgccatagtttttttgtgacattggtgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattatttt 48915425  T
Q  187 gatgagcgagaatatgttggcaagagagagatagatacaaaa 228  Q
    |||||| ||||||  ||||  |||||||||||||| ||||||    
T  48915426 gatgagagagaatgagttgttaagagagagatagacacaaaa 48915467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 50539677 - 50539836
Alignment:
Q  90 cgggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattt 185  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    |||||| |||| |||||  ||||||||||||||||||||    
T  50539677 cgggaaatacttgggtgccatagtttattggtgtcattggtgacataagttcattttagaagagagataatgatgaatagatgattaaaataaattattt 50539776  T
Q  186 agatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    | || |  ||||||  ||||  |||||||||||||| ||||| || |||||  |||||||    
T  50539777 aaataaaagagaatgagttgttaagagagagatagacacaaaggtgtcaataacaccaaa 50539836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 19456260 - 19456418
Alignment:
Q  90 cgggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattt 185  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||  ||||||||    ||||||||||| |||||  ||||||||||||||||||||    
T  19456260 cgggaaatacttgggtgccatagctttt-ggtgtcattggtgacatagattcattttagatgagagagaatgatgaatagatgattaaaataaattattt 19456358  T
Q  186 agatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    ||||||| ||||||   |||  |||| ||||||||| ||||| ||  ||||| |||||||    
T  19456359 agatgagagagaatgaattgttaagaaagagatagacacaaaggtgccaatgacaccaaa 19456418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 48843504 - 48843377
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatgag 192  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||  |||     |  |||||||||||||||||||||||||||||    
T  48843504 gaaatacttgggtgccatagttttttggtgccattggtgacataggttcatttt-aga-tgaa-----agagaatgattaaaataaattatttagatgag 48843412  T
Q  193 cgagaatatgttggcaagagagagatagatacaaa 227  Q
     ||||||   |||  ||||||||||||||||||||    
T  48843411 agagaatgaattgttaagagagagatagatacaaa 48843377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 27907822 - 27907704
Alignment:
Q  102 gggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaatat 201  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| |||   ||    ||  ||||||||||||||||||||||||||||| ||||||      
T  27907822 gggtgccatagttttttggtgtcattggtgacataggttcatttt-agatgaaa----ga--gaatgattaaaataaattatttagatgagagagaatga 27907730  T
Q  202 gttggcaagagagagatagatacaaa 227  Q
    ||||  |||||||||||||| |||||    
T  27907729 gttgttaagagagagatagacacaaa 27907704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 24671238 - 24671139
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||| ||||||  || |  |||||| |||| || ||||| ||||||||| |||||||    
T  24671238 tgagagagagtgatgaatgaatgattaaaataaattatttaaatgagagagaatgagtggttaagagaaagatggaaacaaaggtatcaatgacaccaaa 24671139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 5398034 - 5398130
Alignment:
Q  149 gagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||| ||||||  || |  |||||||||||||| ||||  |||  ||||||||||||    
T  5398034 gagagaatgatgaatgaattattaaaataaactatttagatgagagagaatgagtggttaagagagagatagagacaatggtactaatggcaccaaa 5398130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 27032326 - 27032389
Alignment:
Q  164 gaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaa 227  Q
    ||||||||||||||||||||||||||||| ||||||  ||||  |||||||||||||| |||||    
T  27032326 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaa 27032389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 19431399 - 19431452
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||| ||||||    
T  19431399 tgagacagaatgatggatgaatgattaaaataaattatttagatgagagagaat 19431452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 17923908 - 17923857
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgaga 197  Q
    |||||||||||| || |||||| |||||||||||||||||||||||| ||||    
T  17923908 tgagagagaatgttggatgaataattaaaataaattatttagatgagagaga 17923857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 51748682 - 51748581
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatg 190  Q
    ||||||||||||| |||||||||||||||||| ||||| | |||||  |||||||| |  || |     ||  |||||||||||||||||||||||||||    
T  51748682 gggaaatacttggatgccatagttttttggtgccattgatgacatagattcattttaaatgaaa-----ga--gaatgattaaaataaattatttagatg 51748590  T
Q  191 agcgagaat 199  Q
    || ||||||    
T  51748589 agagagaat 51748581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 26478703 - 26478599
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    |||||||| |||  || ||||||||||| |||| |||||| ||| | ||| |||||    ||||||||||| ||||||||| |||||||||||| |||||    
T  26478703 gggaaatatttgaatgtcatagttttttagtgttattggtgacaaaggttaattttagatgagagagaatgatgaatgaataattaaaataaatcattta 26478604  T
Q  187 gatga 191  Q
     ||||    
T  26478603 aatga 26478599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 49177534 - 49177432
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt-----gagagagaatggtgaatgaatgattaaaataaattatttag 187  Q
    |||||||||||||| ||||||  |||||||| ||| || ||||   ||||||||     |||||| |||| ||| |||||||||||||||||||||||||    
T  49177534 gaaatacttgggtgtcatagtcctttggtgttattagtgacattgattcatttttagatgagagaaaatgatga-tgaatgattaaaataaattatttag 49177436  T
Q  188 atga 191  Q
    ||||    
T  49177435 atga 49177432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 3950304 - 3950358
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaata 200  Q
    |||||||||||| |  |||||||||||||||||||||||| |||||  |||||||    
T  3950304 tgagagagaatgatcgatgaatgattaaaataaattattttgatgaaagagaata 3950358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 11872201 - 11872250
Alignment:
Q  150 agagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||| ||| |||||||||| |||||||||||| |||||| ||||||    
T  11872201 agagaatgatgattgaatgattataataaattattttgatgagagagaat 11872250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 39004683 - 39004654
Alignment:
Q  163 tgaatgattaaaataaattatttagatgag 192  Q
    ||||||||||||||||||||||||||||||    
T  39004683 tgaatgattaaaataaattatttagatgag 39004654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 46325599 - 46325652
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||| |  ||||||||||||||||| |||||| |||||| ||||||    
T  46325599 tgagagagaatgatagatgaatgattaaaataagttattttgatgagagagaat 46325652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 49315743 - 49315788
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatga 191  Q
    ||||||||||||||  |||| ||||||||||||||||||| |||||    
T  49315743 tgagagagaatggtagatgagtgattaaaataaattattttgatga 49315788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 15106287 - 15106239
Alignment:
Q  149 gagagaatggtgaatgaatgattaaaataaattatttagatgagcgaga 197  Q
    ||||||||| |  ||||||||||||||||||||||||| ||||| ||||    
T  15106287 gagagaatgatagatgaatgattaaaataaattatttacatgagagaga 15106239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 2628386 - 2628540
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||    ||||||||||| ||||| ||||||||||||||| ||||||    
T  2628386 gggaaatacttggatgccatagttttttggtgccattggtgacataagttcattttagatgagagagaatgatgaataaatgattaaaataaactattta 2628485  T
Q  187 gatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcac 241  Q
    |||||| ||||||  ||||  |||||||||||||| |||||||||||||||||||    
T  2628486 gatgagagagaatgagttgttaagagagagatagacacaaaagtatcaatggcac 2628540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 9488721 - 9488878
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattt----tgaga-gagaatggtgaatgaatgattaaaataaattatttag 187  Q
    |||||| |||||||||||| ||||||||||| |||| | ||||||||||||||    ||||| ||||||| |||||||||||||||||||||||||||||    
T  9488721 gaaatatttgggtgccataattttttggtgttattgatgacataagttcattttagatgagaggagaatgatgaatgaatgattaaaataaattatttag 9488820  T
Q  188 atgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    |  |  | ||||  ||||  |||||||||||| | ||||| |||||||||||||||||    
T  9488821 agaatagggaatgagttgttaagagagagatatacacaaaggtatcaatggcaccaaa 9488878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 46425278 - 46425407
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatg 190  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||  |||     |  |||||||||||||||||||||||||||    
T  46425278 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcatttt-aga-tgaa-----agagaatgattaaaataaattatttagatg 46425370  T
Q  191 agcgagaatatgttggcaagagagagatagatacaaa 227  Q
    || ||||||  ||||  |||||||||||||| |||||    
T  46425371 agagagaatgagttgttaagagagagatagacacaaa 46425407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 18867887 - 18868017
Alignment:
Q  90 cgggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagat 189  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||| |||  |||     |  ||||||||||||||||||||||||||    
T  18867887 cgggaaatacttggatgccatagtttttttgtgtcattggtgacataggttcatttt-aga-tgaa-----agagaatgattaaaataaattatttagat 18867979  T
Q  190 gagcgagaatatgttggcaagagagagatagatacaaa 227  Q
    ||| ||||||  ||||  |||||||||||||| |||||    
T  18867980 gagagagaatgagttgttaagagagagatagacacaaa 18868017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 244
Target Start/End: Original strand, 16876678 - 16876823
Alignment:
Q  92 ggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatga 191  Q
    ||||||||||||||||||||||||||||||| ||||| | | ||||||||||||| |||   ||    ||  ||||||||||||||||||||||||||||    
T  16876678 ggaaatacttgggtgccatagttttttggtgccattgatgatataagttcatttt-agatgaaa----ga--gaatgattaaaataaattatttagatga 16876770  T
Q  192 gcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    | ||||||  ||||  |||||||||||||| |||||  || | ||||||||||    
T  16876771 gagagaatgagttgttaagagagagatagacacaaagttacctatggcaccaa 16876823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 32279246 - 32279382
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattatttaga 188  Q
    |||||| |||| || ||||||||||||||||||| ||| ||||| |||||||||    |||||| |||| ||||||||| |||||||||||||||||| |    
T  32279246 gaaatatttggatgtcatagttttttggtgtcatcggtgacataggttcattttagatgagagaaaatgatgaatgaataattaaaataaattatttaaa 32279345  T
Q  189 tgagcgagaatatgttggcaagagagagatagatacaaa 227  Q
    |||| |||  |  ||||  |||||||||||||| |||||    
T  32279346 tgagagag--tgggttgttaagagagagatagacacaaa 32279382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 34328235 - 34328134
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatg 190  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||  |||     |  |||||||||||||||||||||||||||    
T  34328235 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcatttt-aga-tgaa-----agagaatgattaaaataaattatttagatg 34328143  T
Q  191 agcgagaat 199  Q
    || ||||||    
T  34328142 agagagaat 34328134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 23185929 - 23186009
Alignment:
Q  164 gaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    ||||||||||||||||||||||||||||| ||||||  ||||  |||||||||||||| |||||  || | ||||||||||    
T  23185929 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacctatggcaccaa 23186009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 33884052 - 33884105
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||||||||| ||| || |||||||||||||||||||||||| ||||||    
T  33884052 tgagagagaatggtggatggataattaaaataaattatttagatgagagagaat 33884105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 37685200 - 37685245
Alignment:
Q  147 gagagagaatggtgaatgaatgattaaaataaattatttagatgag 192  Q
    ||||||||||| || |||||||||||||||||||||||||||||||    
T  37685200 gagagagaatgttggatgaatgattaaaataaattatttagatgag 37685245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 43368497 - 43368541
Alignment:
Q  148 agagagaatggtgaatgaatgattaaaataaattatttagatgag 192  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  43368497 agagagaatgatggatgaatgattaaaataaattatttagatgag 43368541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 42971652 - 42971733
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaatatgttgg-caagagagagatagatacaaa 227  Q
    |||||||||||| ||   ||||||||||||||||||||||||||||| |||||| || |||  |||||||||||||| |||||    
T  42971652 tgagagagaatgttgggcgaatgattaaaataaattatttagatgagagagaat-tgatggttaagagagagatagaaacaaa 42971733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 7352822 - 7352786
Alignment:
Q  150 agagaatggtgaatgaatgattaaaataaattattta 186  Q
    |||||||| ||||||||||||||||||||||||||||    
T  7352822 agagaatgttgaatgaatgattaaaataaattattta 7352786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 11369064 - 11369106
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttaga 188  Q
    |||||||||||| || || ||||||||||||||||||||||||    
T  11369064 tgagagagaatgttggataaatgattaaaataaattatttaga 11369106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 15667937 - 15667904
Alignment:
Q  159 tgaatgaatgattaaaataaattatttagatgag 192  Q
    |||||||||||||||||||||||||||| |||||    
T  15667937 tgaatgaatgattaaaataaattatttaaatgag 15667904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 42266449 - 42266486
Alignment:
Q  162 atgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  42266449 atgaatgattaaaataaattatttaaatgagtgagaat 42266486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 16876851 - 16876819
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggt 130  Q
    ||||||||||||||||||||||||| |||||||    
T  16876851 acttgggtgccatagttttttggtgccattggt 16876819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 23185867 - 23185918
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt 146  Q
    ||||| ||||||||||||||||||| ||| ||||||| |||| ||||||||||    
T  23185867 aaatatttgggtgccatagttttttagtgccattggtgacat-agttcatttt 23185918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 23186037 - 23186005
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggt 130  Q
    ||||||||||||||||||||||||| |||||||    
T  23186037 acttgggtgccatagttttttggtgccattggt 23186005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 33748033 - 33747985
Alignment:
Q  151 gagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||| ||||||||  ||||||||||||||||||||| || ||||||    
T  33748033 gagaatgatgaatgaacaattaaaataaattatttagataagagagaat 33747985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 34328072 - 34328100
Alignment:
Q  98 acttgggtgccatagttttttggtgtcat 126  Q
    |||||||||||||||||||||||||||||    
T  34328072 acttgggtgccatagttttttggtgtcat 34328100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 42691095 - 42691131
Alignment:
Q  163 tgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  42691095 tgaatgattaaaataaattattttgatgagagagaat 42691131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 4834920 - 4835077
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||| |||||||||    ||||||||||| ||||||||||||||||||||||||||||    
T  4834920 gggaaatacttgggtgccatagttttttggtgatattggtgacataggttcattttagatgagagagaatgatgaatgaatgattaaaataaattattta 4835019  T
Q  187 gatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    | |||  ||||||  ||||  |||||| ||||||| ||||||||||||||||||||||    
T  4835020 ggtgaaagagaatgagttgttaagagaaagatagacacaaaagtatcaatggcaccaa 4835077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 33938556 - 33938682
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatgagc 193  Q
    ||||||||||||||||||||||||||||| ||||| | ||||| ||||||||| ||| | ||    ||   ||||||||||||||||||||||||||||     
T  33938556 aaatacttgggtgccatagttttttggtgccattgatgacataggttcatttt-agataaaa----ga--taatgattaaaataaattatttagatgaga 33938648  T
Q  194 gagaatatgttggcaagagagagatagatacaaa 227  Q
    ||||||   |||  |||||||||||||| |||||    
T  33938649 gagaatgaattgttaagagagagatagacacaaa 33938682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 16467730 - 16467674
Alignment:
Q  90 cgggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt 146  Q
    |||||||||||||||||| |||||||||||||| ||||||| | ||| |||||||||    
T  16467730 cgggaaatacttgggtgcgatagttttttggtgacattggtgatataggttcatttt 16467674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 16499773 - 16499825
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt 146  Q
    ||||||||||||||||||||||||||||| ||||||| | ||| |||||||||    
T  16499773 aaatacttgggtgccatagttttttggtgacattggtgatataggttcatttt 16499825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 20896212 - 20896249
Alignment:
Q  162 atgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  20896212 atgaatgattaaaataaattatttagatgagagagaat 20896249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 16508698 - 16508750
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt 146  Q
    |||||||||||||||||| |||||||||| ||||||| | ||| |||||||||    
T  16508698 aaatacttgggtgccatatttttttggtgacattggtgatataggttcatttt 16508750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 41474300 - 41474362
Alignment:
Q  159 tgaatgaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagataga 221  Q
    |||||||||||||||||||||||||||| || || || |||| ||||  |||||||| |||||    
T  41474300 tgaatgaatgattaaaataaattatttaaataagagataataagttgttaagagagaaataga 41474362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 16467663 - 16467582
Alignment:
Q  164 gaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    ||||||||||| ||||||||||||||||| |||||||  ||   |||||||||||| | |||||  |||| ||| |||||||    
T  16467663 gaatgattaaactaaattatttagatgagagagaataaattattaagagagagataaacacaaagttatctatgacaccaaa 16467582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 44132898 - 44132935
Alignment:
Q  162 atgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  44132898 atgaatgattaaaataaattattttgatgagagagaat 44132935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 16508878 - 16508846
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggt 130  Q
    ||||||||||||||||||||||||| |||||||    
T  16508878 acttgggtgccatagttttttggtgccattggt 16508846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 29768303 - 29768347
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataa 137  Q
    ||||||||||| ||||||| ||||||| || ||||||||||||||    
T  29768303 gaaatacttggatgccataattttttgatgccattggtaacataa 29768347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 10688744 - 10688591
Alignment:
Q  96 atacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattatttagatga 191  Q
    |||||||||||| ||||||||||||| |||||| | |||||||||||||||    ||||||||||| |||||||||||||||||||||||||||||||||    
T  10688744 atacttgggtgctatagttttttggtatcattgatgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattatttagatga 10688645  T
Q  192 gcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    | ||||||  ||||  |||||||||||||| ||||| ||| |||||||||||||    
T  10688644 gagagaatgagttgttaagagagagatagacacaaaggtaccaatggcaccaaa 10688591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 47548977 - 47548872
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattt----tgagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||    |||||||||||| |||||| |||||||||||||||||||||    
T  47548977 gggaaatacttgggtgccatggttttttggtgccattggtaacataggttcattttagatgagagagaatgttgaatggatgattaaaataaattattta 47548878  T
Q  187 gatgag 192  Q
    ||||||    
T  47548877 gatgag 47548872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 39994321 - 39994174
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatg 190  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||  |||     |  |||||||||||||||||||||||||||    
T  39994321 gggaaatacttgggtgccatagttttttggtgtcattggtgacataagttaatttt-aga-tgaa-----agagaatgattaaaataaattatttagatg 39994229  T
Q  191 agcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    || ||||||  ||||  || |||||||||||||||||  || | |||||||||||    
T  39994228 agagagaatgagttgttaaaagagagatagatacaaagttacctatggcaccaaa 39994174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 50700151 - 50700026
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt-ga-gagagaatggtgaatgaatgattaaaataaattatttagatg 190  Q
    ||||||||||| ||| |||||||||| ||| ||||||| ||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||| |    
T  50700151 gaaatacttggatgctatagttttttagtgccattggtgacataagttcattttagatgagagaatgatgaataaatgattaaaataaattatttagacg 50700052  T
Q  191 agcgagaatatgttggcaagagagagata 219  Q
    || |||||| ||||   ||||||||||||    
T  50700051 agagagaatgtgtt---aagagagagata 50700026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 4037272 - 4037125
Alignment:
Q  90 cgggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagat 189  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||  |||     |  ||||||||||||||||||||||||||    
T  4037272 cgggaaatacttgggtgccatagttttttggtgccattggtgacataggttcatttt-aga-tgaa-----agagaatgattaaaataaattatttagat 4037180  T
Q  190 gagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    ||| ||||||  ||||  |||||||||||||| |||||  || | ||||||||||    
T  4037179 gagagagaatgagttgttaagagagagatagacacaaagttacctatggcaccaa 4037125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 49279616 - 49279490
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatgag 192  Q
    |||||| |||||||||||||||||||| ||||||||||  |||||||||||||| |||   ||    ||  |||||||||||||||||||||||||||||    
T  49279616 gaaatatttgggtgccatagttttttgatgtcattggtg-cataagttcatttt-agatgaaa----ga--gaatgattaaaataaattatttagatgag 49279525  T
Q  193 cgagaatatgttggcaagagagagatagatacaaa 227  Q
     ||||||  ||||  |||||||||||||| |||||    
T  49279524 agagaatgagttgttaagagagagatagacacaaa 49279490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 11233633 - 11233507
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatgagc 193  Q
    ||||||||||||| ||||||||||| ||||||||| | ||||||||| ||||| |||   ||    ||  |||||||||||||||||||||||||||||     
T  11233633 aaatacttgggtgtcatagttttttagtgtcattgatgacataagtttatttt-agatgaaa----ga--gaatgattaaaataaattatttagatgaga 11233541  T
Q  194 gagaatatgttggcaagagagagatagatacaaa 227  Q
    ||||||  ||||  |||||||||||||| |||||    
T  11233540 gagaatgagttgttaagagagagatagacacaaa 11233507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 34272407 - 34272458
Alignment:
Q  95 aatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt 146  Q
    ||||||| ||||||||||||||||||||| |||||| ||||| |||||||||    
T  34272407 aatacttaggtgccatagttttttggtgttattggtgacataggttcatttt 34272458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 39485479 - 39485530
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgaga 197  Q
    |||||||||| | || ||||||||||||||||||||||||||||||| ||||    
T  39485479 tgagagagaaggttggatgaatgattaaaataaattatttagatgagagaga 39485530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 39973056 - 39972993
Alignment:
Q  164 gaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaa 227  Q
    |||||||||||||||||||||| |||||| ||||||  ||||  |||||||||||||| |||||    
T  39973056 gaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagatagacacaaa 39972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 39350750 - 39350798
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggtaacataagttcatttt 146  Q
    ||||||||||||||||||||||||| |||||||  |||| |||||||||    
T  39350750 acttgggtgccatagttttttggtgccattggtgccataggttcatttt 39350798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 39973113 - 39973082
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtg 122  Q
    ||||||||||||||||||||||||||||||||    
T  39973113 gggaaatacttgggtgccatagttttttggtg 39973082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 132184 - 132151
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaa 179  Q
    |||||||||||| |||||||||||||||||||||    
T  132184 tgagagagaatgatgaatgaatgattaaaataaa 132151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 20345117 - 20345080
Alignment:
Q  162 atgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  20345117 atgaatgattaaaataaattatttaaatgagagagaat 20345080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 46348401 - 46348454
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||| ||||||||| ||||| ||||| |||||| ||||| ||||||    
T  46348401 tgagagagaatgatgaatgaattattaagataaactatttaaatgagagagaat 46348454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 4037097 - 4037129
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggt 130  Q
    ||||||||||||||||||||||||| |||||||    
T  4037097 acttgggtgccatagttttttggtgccattggt 4037129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 42466972 - 42467008
Alignment:
Q  152 agaatggtgaatgaatgattaaaataaattatttaga 188  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  42466972 agaatgatgaatgaataattaaaataaattatttaga 42467008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 49279445 - 49279477
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggt 130  Q
    |||||| ||||||||||||||||||||||||||    
T  49279445 acttggatgccatagttttttggtgtcattggt 49279477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 39729068 - 39728960
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||| |||||||||||||||||||||||    
T  39729068 tgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaatatgttggtaagaaagaaatagacacaaaagtatcaatggcaccaaa 39728969  T
Q  246 gtgctaccc 254  Q
    |||||||||    
T  39728968 gtgctaccc 39728960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 91 - 253
Target Start/End: Original strand, 6752024 - 6752190
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    |||||||||||||||||||||||||||||||  ||||| | |||||||||||||||    ||||||||||| | ||||||||||||||||||||||||||    
T  6752024 gggaaatacttgggtgccatagttttttggtaccattgatgacataagttcattttagatgagagagaatgataaatgaatgattaaaataaattattta 6752123  T
Q  187 gatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaagtgctacc 253  Q
    |||||| || | || ||||  |||||||||||||| ||| | ||||||||| |||| ||||||||||    
T  6752124 gatgagagaaagtaagttgttaagagagagatagacacagaggtatcaatgacacctaagtgctacc 6752190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 41069623 - 41069772
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||    ||||||||||| ||||||||||||||||||||||||||||    
T  41069623 gggaaatacttgggtgccataattttttggtgccattggtgacataggttcattttagatgagagagaatgatgaatgaatgattaaaataaattattta 41069722  T
Q  187 gatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaat 236  Q
    |||||| ||||||   |||  |||||| ||||||| ||||| ||||||||    
T  41069723 gatgagagagaatgaattgttaagagacagatagacacaaatgtatcaat 41069772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 91 - 255
Target Start/End: Complemental strand, 11226279 - 11226119
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    ||||||||||||||||||||||||||||        |||| ||||| |||||||||    |||||||||||  |||||||||||||||||||||||||||    
T  11226279 gggaaatacttgggtgccatagtttttt--------tggtgacataggttcattttaaatgagagagaatgacgaatgaatgattaaaataaattattta 11226188  T
Q  187 gatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaagtgctacccg 255  Q
    |||||| ||||||  ||||  |||||||||||||| ||||| ||| |||||||||| ||||||||||||    
T  11226187 gatgagagagaatgagttgttaagagagagatagacacaaaggtaccaatggcacccaagtgctacccg 11226119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 31750604 - 31750447
Alignment:
Q  90 cgggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttg----agagagaatggtgaatgaatgattaaaataaattattt 185  Q
    |||||||||||| ||||||||||||| |||||| ||||||| |||||  ||||||||     | |||||||| |||||||||||||||||||||  ||||    
T  31750604 cgggaaatacttaggtgccatagtttgttggtgccattggtgacatatattcattttagatcacagagaatgatgaatgaatgattaaaataaa--attt 31750507  T
Q  186 agatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    ||||||| || |||   |||  |||||||||||||| ||||| |||||||||||||||||    
T  31750506 agatgagagaaaatgaattgttaagagagagatagacacaaaggtatcaatggcaccaaa 31750447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 15142010 - 15141863
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatg 190  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |||  |||     |  |||||||||||||||||||||||||||    
T  15142010 gggaaatacttgggtgccatagttttttgatgtcattggtgacataggttcatttt-aga-tgaa-----agagaatgattaaaataaattatttagatg 15141918  T
Q  191 agcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaa 245  Q
    || ||||||| ||||  || ||||||||||| |||||  |||| |||| ||||||    
T  15141917 agagagaataagttgttaaaagagagatagacacaaagttatctatggtaccaaa 15141863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 23396063 - 23395917
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattatttaga 188  Q
    ||||||||||||||||||||||||||||||         ||||| |||||||||    ||||||||||| | ||||||||||||||||||||||||||||    
T  23396063 gaaatacttgggtgccatagttttttggtg---------acataggttcattttagatgagagagaatgataaatgaatgattaaaataaattatttaga 23395973  T
Q  189 tgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    |||  ||||||  ||||  |||||||||||||| ||||| ||| ||||| ||||||    
T  23395972 tgatagagaatgagttgttaagagagagatagacacaaatgtaccaatgacaccaa 23395917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 36562721 - 36562802
Alignment:
Q  119 ggtgtcattggtaacataagttcattttga-gagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||||||| ||| |||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  36562721 ggtgtcattggtaccattagttcatttttatgagagaatgatgaatgaatgagtaaaataaattatttagatgagagagaat 36562802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 19037010 - 19037128
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatgagc 193  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||| |||  |||     |  |||||||||||||||||||||||||||||     
T  19037010 aaatacttgggtgccatagttttttagtgccattggtgacataggttcatttt-aga-tgaa-----agagaatgattaaaataaattatttagatgaga 19037102  T
Q  194 gagaatatgttggcaagagagagata 219  Q
    ||||||  ||||  ||||||||||||    
T  19037103 gagaatgagttgttaagagagagata 19037128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 32832602 - 32832655
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||| || ||||||||||||||||||||||||||||||| ||||||    
T  32832602 tgagagagaatgttggatgaatgattaaaataaattatttagatgagagagaat 32832655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 3496805 - 3496868
Alignment:
Q  164 gaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaa 227  Q
    ||||||||||||||||||||||||||||| ||||||  ||||  |||||||||||||| |||||    
T  3496805 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaa 3496868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 8209369 - 8209322
Alignment:
Q  152 agaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  8209369 agaatggtaaatgaatgattaaaataaattattttgatgagagagaat 8209322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 13477700 - 13477749
Alignment:
Q  148 agagagaatggtgaatgaatgattaaaataaattatttagatgagcgaga 197  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||| ||||    
T  13477700 agagagaatgatgaatgaatgattaaaataatttatttaaatgagagaga 13477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 33433440 - 33433473
Alignment:
Q  159 tgaatgaatgattaaaataaattatttagatgag 192  Q
    ||||||||||||||||||||||||||||||||||    
T  33433440 tgaatgaatgattaaaataaattatttagatgag 33433473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Original strand, 38529905 - 38529934
Alignment:
Q  162 atgaatgattaaaataaattatttagatga 191  Q
    ||||||||||||||||||||||||||||||    
T  38529905 atgaatgattaaaataaattatttagatga 38529934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 8044345 - 8044317
Alignment:
Q  163 tgaatgattaaaataaattatttagatga 191  Q
    |||||||||||||||||||||||||||||    
T  8044345 tgaatgattaaaataaattatttagatga 8044317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 19037200 - 19037168
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggt 130  Q
    ||||||||||||||||||||||||| |||||||    
T  19037200 acttgggtgccatagttttttggtgccattggt 19037168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 39707535 - 39707503
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggt 130  Q
    ||||||||||||||||||||||||| |||||||    
T  39707535 acttgggtgccatagttttttggtgccattggt 39707503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 2651751 - 2651618
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatgagc 193  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||     |||    ||||||||||||||||||||||||||||||||||     
T  2651751 aaatacttgggtgccatagttttttggtgccattggtgacataagttcatttt-----agatgtatgaatgaatgattaaaataaattatttagatgaga 2651657  T
Q  194 gagaatatgttggcaagagagagatagatacaaaagtat 232  Q
     |||||||||||| |||||||||||| | ||||||||||    
T  2651656 tagaatatgttggtaagagagagataaacacaaaagtat 2651618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 255
Target Start/End: Complemental strand, 34928935 - 34928767
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattt----tgagagagaatggtgaatgaatgattaaaataaattattta 186  Q
    |||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||    |||||||||||| | ||||||||||||||||||||||||||    
T  34928935 gggaaatacttgggtgccatagttttttagtgtcattgatgacatatgttcattttagatgagagagaatgataaatgaatgattaaaataaattattta 34928836  T
Q  187 gatg--agcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaaagtgctacccg 255  Q
    ||||  || ||||||| ||||  |  ||||||||||||||||| ||| ||||| || | || |||||||||    
T  34928835 gatgaaagagagaataagttgtta--agagagatagatacaaaggtaccaatgacatccaaatgctacccg 34928767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 22658965 - 22658819
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcattt----tgagagagaatggtgaatgaatgattaaaataaattatttagat 189  Q
    ||||| || ||||||||||||||||||||  |||||||||||||||||||||    ||| |||||||| |||||||||||||||||||||||||||| ||    
T  22658965 aaatatttaggtgccatagttttttggtgcgattggtaacataagttcattttagatgaaagagaatgatgaatgaatgattaaaataaattatttaaat 22658866  T
Q  190 gagcgagaatatgttggcaagagagagatagatacaaaagtatcaatg 237  Q
    ||   | | |||||||  || ||||||||| | |||||||||||||||    
T  22658865 gaaaaaaagtatgttgctaacagagagata-aaacaaaagtatcaatg 22658819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 37480412 - 37480357
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt 146  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  37480412 gggaaatacttgggtgctatagttttttggtgtcattggtgacataagttcatttt 37480357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 14151895 - 14151993
Alignment:
Q  94 aaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattatttaga 188  Q
    ||||||||||||  |||||||||||| |||||||| | ||||| |||||||||    |||||| |||  ||||||||||||||||||||||||||||||    
T  14151895 aaatacttgggtatcatagttttttgatgtcattgatgacataggttcattttagatgagagataataatgaatgaatgattaaaataaattatttaga 14151993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 27554872 - 27554992
Alignment:
Q  90 cgggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt----gagagagaatggtgaatgaatgattaaaataaattattt 185  Q
    |||||||||||| ||||||||||||||||  || ||||| | | ||||||| |||||    |||||| |||| ||||| ||| ||||||||| |||||||    
T  27554872 cgggaaatactttggtgccatagttttttactgccattgatgatataagtttattttagatgagagaaaatgatgaataaataattaaaatagattattt 27554971  T
Q  186 agatgagcgagaatatgttgg 206  Q
    ||||||| || ||||||||||    
T  27554972 agatgagagaaaatatgttgg 27554992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 33953210 - 33953157
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  33953210 tgagagagaatggtggatgaataattaaaataaattatttagatgagagagaat 33953157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 19824666 - 19824613
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||| ||||||    
T  19824666 tgagagagaatgttagatgaatgattaaaataaattatttagatgagagagaat 19824613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 25089502 - 25089454
Alignment:
Q  20 gttatgagagtgaaaactgaagcgcgaatgtgtattttaaacttatata 68  Q
    ||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  25089502 gttatgaaagtgaaaactaaagcgcgaatgtgttttttaaacttatata 25089454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 22029859 - 22029905
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgag 192  Q
    |||||||||||| || |||||||||||||||||||||||| ||||||    
T  22029859 tgagagagaatgttggatgaatgattaaaataaattatttggatgag 22029905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 37515524 - 37515652
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatg 190  Q
    ||||||||  ||||||||||||||||| ||||| |||| | ||||||||||||||| ||| | ||    ||  |||||||||||||||||||||||||||    
T  37515524 gggaaatatctgggtgccatagttttt-ggtgttattgatgacataagttcatttt-agataaaa----ga--gaatgattaaaataaattatttagatg 37515615  T
Q  191 agcgagaatatgttggcaagagagagatagatacaaa 227  Q
    |  || |||  ||||  |||||||||||||| |||||    
T  37515616 atagataatgagttgttaagagagagatagacacaaa 37515652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 22473665 - 22473611
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcatttt 146  Q
    |||||||||||||||||||||||||||||| | || |||| ||||| |||||||||    
T  22473665 gggaaatacttgggtgccatagttttttggcgcca-tggtgacatatgttcatttt 22473611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 33922871 - 33922922
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgaga 197  Q
    |||||||||||| | |||||||||||||||||||| || |||||||| ||||    
T  33922871 tgagagagaatgataaatgaatgattaaaataaataatgtagatgagagaga 33922922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 31882650 - 31882600
Alignment:
Q  149 gagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||| |  |||||| |||||||||||||||||||||||| ||||||    
T  31882650 gagagaatgtttgatgaataattaaaataaattatttagatgagagagaat 31882600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 2630808 - 2630861
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||| || ||||||||| || |||||||||||||||| | ||||||    
T  2630808 tgagagagaatgttggatgaatgataaacataaattatttagatgtgagagaat 2630861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 18623597 - 18623638
Alignment:
Q  148 agagagaatggtgaatgaatgattaaaataaattatttagat 189  Q
    |||||||||| |  ||||||||||||||||||||||||||||    
T  18623597 agagagaatgatagatgaatgattaaaataaattatttagat 18623638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 25089443 - 25089414
Alignment:
Q  257 ttcaagcactttactatactatgcaatata 286  Q
    ||||||||||||||||||||||||||||||    
T  25089443 ttcaagcactttactatactatgcaatata 25089414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 25147412 - 25147383
Alignment:
Q  257 ttcaagcactttactatactatgcaatata 286  Q
    ||||||||||||||||||||||||||||||    
T  25147412 ttcaagcactttactatactatgcaatata 25147383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 25147472 - 25147423
Alignment:
Q  20 gttatgagagtgaaaactgaagcgcgaatg-tgtattttaaacttatata 68  Q
    ||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  25147472 gttatgaaagtgaaaactaaagcgcgaatgttgttttttaaacttatata 25147423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 42321142 - 42321089
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||| |  ||||||| |||||||| |||||||||||||| ||||||    
T  42321142 tgagagagaatgttagatgaatgtttaaaatatattatttagatgagagagaat 42321089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 9928392 - 9928245
Alignment:
Q  90 cgggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagat 189  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||  |||     |  ||||||||||||||||||||||||||    
T  9928392 cgggaaatacttgggtgccatagttttttggtgccattggtgacataggttcatttt-aga-tgaa-----agagaatgattaaaataaattatttagat 9928300  T
Q  190 gagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    ||| ||||||  ||||  |||||||||||||| |||||  || | ||||||||||    
T  9928299 gagagagaatgagttgttaagagagagatagacacaaagttacctatggcaccaa 9928245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 22469829 - 22469683
Alignment:
Q  91 gggaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatg 190  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||| |||  |||     |  |||||||||||||||||||||||||||    
T  22469829 gggaaatactcgggtgccatagttttttggtgccattggtgacataggttcatttt-aga-tgaa-----agagaatgattaaaataaattatttagatg 22469737  T
Q  191 agcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    || ||||||  ||||  |||| ||||||||| |||||  || | ||||||||||    
T  22469736 agagagaatgagttgttaagaaagagatagacacaaagttacctatggcaccaa 22469683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 457731 - 457685
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgag 192  Q
    |||||||||||| || |||||||||||||||||||||||||||||||    
T  457731 tgagagagaatgatggatgaatgattaaaataaattatttagatgag 457685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 31743922 - 31743844
Alignment:
Q  164 gaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    ||||||||||||||||||||||||||||  ||||||| ||||  || ||||||||||| |||||| |||| ||| ||||||    
T  31743922 gaatgattaaaataaattatttagatga--gagaataagttgttaaaagagagatagacacaaaactatctatgacaccaa 31743844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 7506696 - 7506616
Alignment:
Q  164 gaatgattaaaataaattatttagatgagcgagaatatgttggcaagagagagatagatacaaaagtatcaatggcaccaa 244  Q
    ||||||||||||||||||||||||||||| ||||||  ||||  |||||||||||| ||| |||  || | ||||||||||    
T  7506696 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataaatataaagttacctatggcaccaa 7506616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 28963599 - 28963652
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||||||  ||||||||||||||||||| |||||| |||||| ||||||    
T  28963599 tgagagagaatgaagaatgaatgattaaaataacttattttgatgagagagaat 28963652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 22469655 - 22469687
Alignment:
Q  98 acttgggtgccatagttttttggtgtcattggt 130  Q
    |||||||||||||||||||||||||||||||||    
T  22469655 acttgggtgccatagttttttggtgtcattggt 22469687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 6139381 - 6139347
Alignment:
Q  165 aatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||||||||||||||||||| ||||||    
T  6139381 aatgattaaaataaattatttagatgagagagaat 6139347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 3037383 - 3037428
Alignment:
Q  146 tgagagagaatggtgaatgaatgattaaaataaattatttagatga 191  Q
    ||||||| |||| || |||||||||||||||||||| |||||||||    
T  3037383 tgagagaaaatgttggatgaatgattaaaataaattttttagatga 3037428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 8585780 - 8585739
Alignment:
Q  150 agagaatggtgaatgaatgattaaaataaattatttagatga 191  Q
    |||||||| || ||||||||||||||||||| ||||||||||    
T  8585780 agagaatgatggatgaatgattaaaataaatgatttagatga 8585739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 28067378 - 28067341
Alignment:
Q  162 atgaatgattaaaataaattatttagatgagcgagaat 199  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  28067378 atgaatgattaaaataaattattttgatgagagagaat 28067341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 31743986 - 31743933
Alignment:
Q  94 aaatacttgggtgccatagttttttggt-gtcattggtaacataagttcatttt 146  Q
    ||||| |||||||||||||||||||  | | |||||||||||||||||||||||    
T  31743986 aaatatttgggtgccatagtttttttattgccattggtaacataagttcatttt 31743933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 9549452 - 9549395
Alignment:
Q  146 tgagagagaatggtgaatga----atgattaaaataaattatttagatgagcgagaat 199  Q
    ||||||||||||||||||||    ||||||||||||||||||||| || || ||||||    
T  9549452 tgagagagaatggtgaatgaatgaatgattaaaataaattatttaaattagagagaat 9549395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 15219 - 15092
Alignment:
Q  93 gaaatacttgggtgccatagttttttggtgtcattggtaacataagttcattttgagagagaatggtgaatgaatgattaaaataaattatttagatgag 192  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||| |||  ||| | |     ||||||||||||||||||||| ||||||    
T  15219 gaaatacttgggtgccataattttttggtgccattggtgacatatgttcatttt-aga-tgaaagat-----aatgattaaaataaattattttgatgag 15127  T
Q  193 cgagaatatgttggcaagagagagatagatacaaa 227  Q
     ||||||  ||||  |||| ||||||||| |||||    
T  15126 agagaatgagttgttaagatagagatagacacaaa 15092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 15058 - 15091
Alignment:
Q  100 ttgggtgccatagttttttggtgtcattggtaac 133  Q
    ||||||||||||||||||||||||||| ||||||    
T  15058 ttgggtgccatagttttttggtgtcataggtaac 15091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 20354 - 20321
Alignment:
Q  159 tgaatgaatgattaaaataaattatttagatgag 192  Q
    ||||||||||||||||||||||||||||||||||    
T  20354 tgaatgaatgattaaaataaattatttagatgag 20321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 31637 - 31608
Alignment:
Q  162 atgaatgattaaaataaattatttagatga 191  Q
    ||||||||||||||||||||||||||||||    
T  31637 atgaatgattaaaataaattatttagatga 31608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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