View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8861_high_14 (Length: 240)
Name: NF8861_high_14
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_high_14 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 14233492 - 14233697
Alignment:
| Q |
20 |
gctaagagaatccttagttacatcaagggtaatatgtgaaatttggtttgttattgaagtgaatgagcttatagtttactcaaatagtgactggtgtgga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233492 |
gctaagagaatccttagttacatcaagggtaatatgtgaaatttggtttgttattgaagtgaatgagcttatagtttactcaaatagtgactggtgtgga |
14233591 |
T |
|
| Q |
120 |
gatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttccatatcctggtgcatcaagaagcaaccaattactgcactctcat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233592 |
gatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttccatatcctggtgcatcaagaagcaaccaattactgcactctcat |
14233691 |
T |
|
| Q |
220 |
tctgtg |
225 |
Q |
| |
|
|||||| |
|
|
| T |
14233692 |
tctgtg |
14233697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 9880718 - 9880863
Alignment:
| Q |
74 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
173 |
Q |
| |
|
|||| |||||||| |||||| |||||| | ||||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
9880718 |
tgaattgaatgagtttataggttactctgacagtgattggtgtggagatttgactgacagaagaagcacctcaggctatgttttcaagttcaatgattct |
9880817 |
T |
|
| Q |
174 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcat |
219 |
Q |
| |
|
||||||||||||| || ||||||||||| | |||||| |||||||| |
|
|
| T |
9880818 |
tccatatcctggtacaccaagaagcaactagttactgtactctcat |
9880863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 5722090 - 5721973
Alignment:
| Q |
72 |
attgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatg |
171 |
Q |
| |
|
||||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || ||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
5722090 |
attgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatg |
5721991 |
T |
|
| Q |
172 |
cttccatatcctggtgca |
189 |
Q |
| |
|
|| | || |||||||||| |
|
|
| T |
5721990 |
ctgcaatctcctggtgca |
5721973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 9880647 - 9880694
Alignment:
| Q |
20 |
gctaagagaatccttagttacatcaagggtaatatgtgaaatttggtttg |
69 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
9880647 |
gctaagagaatccttagatacatcaagggtaata--tggaatttggtttg |
9880694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 44536634 - 44536489
Alignment:
| Q |
74 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
173 |
Q |
| |
|
||||||||||||||| |||| || ||| | ||||| |||||||||||| | ||||| || ||||||| |||| ||||| ||||| |||||||||||| |
|
|
| T |
44536634 |
tgaagtgaatgagctcataggatattcagacagtgattggtgtggagatctaattgataggagaagcacttcaggttatgtgttcaaattcaatgatgct |
44536535 |
T |
|
| Q |
174 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcat |
219 |
Q |
| |
|
| || |||||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
44536534 |
gcaatctcctggtgcaccaagaagcaaccaatcactgcgctctcat |
44536489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 48753 - 48904
Alignment:
| Q |
74 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
173 |
Q |
| |
|
||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || |||| || || | ||||| ||||| |||||||||||| |
|
|
| T |
48753 |
tgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaaacacttcaagttatgtgttcaaattcaatgatgct |
48852 |
T |
|
| Q |
174 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtg |
225 |
Q |
| |
|
| || || ||||||| ||||||||||||| | |||||||| |||| ||||| |
|
|
| T |
48853 |
gcaatttcatggtgcaccaagaagcaaccagtcactgcactttcatcctgtg |
48904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 28248591 - 28248742
Alignment:
| Q |
74 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
173 |
Q |
| |
|
||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || |||| || || | ||||| ||||| |||||||||||| |
|
|
| T |
28248591 |
tgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaaacacttcaagttatgtgttcaaattcaatgatgct |
28248690 |
T |
|
| Q |
174 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtg |
225 |
Q |
| |
|
| || || ||||||| ||||||||||||| | |||||||| |||| ||||| |
|
|
| T |
28248691 |
gcaatttcatggtgcaccaagaagcaaccagtcactgcactttcatcctgtg |
28248742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 3461218 - 3461361
Alignment:
| Q |
76 |
aagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttc |
175 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||| ||||||||||| ||| ||| || ||||||| |||| ||||| ||||| |||||||||||| | |
|
|
| T |
3461218 |
aagtgaatgagctcatatgatactctgatagtgattggtgtggagacctgactgataggagaagcacttcaggttatgtgttcaaattcaatgatgctgc |
3461317 |
T |
|
| Q |
176 |
catatcctggtgcatcaagaagcaaccaattactgcactctcat |
219 |
Q |
| |
|
|| || ||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
3461318 |
aatctcatggtgcacaaagaagcaaccagtcactgcactctcat |
3461361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 301769 - 301914
Alignment:
| Q |
74 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
173 |
Q |
| |
|
|||||||||||| || |||| ||| ||| | | ||| |||||||||||| | ||||| || ||||||| ||| ||||| ||||| |||||||||||| |
|
|
| T |
301769 |
tgaagtgaatgacctcataggttattcagacaatgattggtgtggagatctaattgataggagaagcacttcagattatgtgttcaaattcaatgatgct |
301868 |
T |
|
| Q |
174 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcat |
219 |
Q |
| |
|
| || || ||||||| ||||||||||||| | | ||||||||||| |
|
|
| T |
301869 |
gcaatctcttggtgcaccaagaagcaaccagtcaatgcactctcat |
301914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 296575 - 296649
Alignment:
| Q |
145 |
caggctatgttttcaagttcaatgatgcttccatatcctggtgcatcaagaagcaaccaattactgcactctcat |
219 |
Q |
| |
|
|||| ||||| ||||| |||||||||||| | || |||||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
296575 |
caggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcaccgcactctcat |
296649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 35898090 - 35898233
Alignment:
| Q |
76 |
aagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttc |
175 |
Q |
| |
|
|||||||||| || |||| ||||| ||||||| ||||||||||| | | ||| || |||| || |||| ||||| ||||| |||||||||||| | |
|
|
| T |
35898090 |
aagtgaatgaactcataggatactctgatagtgattggtgtggagacctaactgataggagaaacacttcaggttatgtgttcaaattcaatgatgctgc |
35898189 |
T |
|
| Q |
176 |
catatcctggtgcatcaagaagcaaccaattactgcactctcat |
219 |
Q |
| |
|
|| || ||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
35898190 |
aatctcatggtgcacaaagaagcaaccagtcactgcactctcat |
35898233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 18645860 - 18645743
Alignment:
| Q |
72 |
attgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatg |
171 |
Q |
| |
|
||||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || ||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
18645860 |
attgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatg |
18645761 |
T |
|
| Q |
172 |
cttccatatcctggtgca |
189 |
Q |
| |
|
|| | || |||||||||| |
|
|
| T |
18645760 |
ctgcaatctcctggtgca |
18645743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 215
Target Start/End: Original strand, 34982781 - 34982922
Alignment:
| Q |
74 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
173 |
Q |
| |
|
|||||| |||||||| |||| ||||||| ||||||| |||||||||||| | | || |||| |||| |||||||||| ||||| ||||||||| || |
|
|
| T |
34982781 |
tgaagttaatgagctcataggttactcagatagtgattggtgtggagatctaaccgatagaaagagcacatcaggctatgtgttcaaattcaatgatact |
34982880 |
T |
|
| Q |
174 |
tccatatcctggtgcatcaagaagcaaccaattactgcactc |
215 |
Q |
| |
|
| || || ||||| | ||||||||||| | | ||||||||| |
|
|
| T |
34982881 |
gcaatttcatggtgtaccaagaagcaactagtcactgcactc |
34982922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 37787255 - 37787181
Alignment:
| Q |
145 |
caggctatgttttcaagttcaatgatgcttccatatcctggtgcatcaagaagcaaccaattactgcactctcat |
219 |
Q |
| |
|
|||| ||||| ||||| |||||||||||| | || |||| ||||| ||||||||||||||| || | |||||||| |
|
|
| T |
37787255 |
caggttatgtgttcaaattcaatgatgctgcaatctcctagtgcaccaagaagcaaccaatcacaggactctcat |
37787181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University