View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_high_2 (Length: 452)
Name: NF8861_high_2
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 37272969 - 37272589
Alignment:
| Q |
1 |
gcagcttttgcagcacaacaaatagctgaaatagcagaaggatcatcagacaaccgtggtttagcacttttgttaccattaattccagccattgcttggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37272969 |
gcagcttttgcagcacaacaaatagctgaaatagcagaaggatcatcagacaaccgtggtttagcacttttgttaccattaattccagccatagcttggg |
37272870 |
T |
|
| Q |
101 |
ttctgtacaacattcttcaaccagcacttaaccaaatcaaccgtatgcgtaacgataaaggagttataattggtttaggtcttgggggtgggttagcagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272869 |
ttctgtacaacattcttcaaccagcacttaaccaaatcaaccgtatgcgtaacgataaaggagttataattggtttaggtcttgggggtgggttagcagc |
37272770 |
T |
|
| Q |
201 |
ttcagggtttgtatcaacacaagatgcaattgctagtgaaatggctgcaattgctgaagctgctggtagtgataacaggggtcagcttctgttgtttgtt |
300 |
Q |
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| T |
37272769 |
ttcagggtttgtatcaacacaagatgcaattgctagtgaaatgactgcaattgctgaagctgctggtagtgataacaggggtcagcttctgttgtttgtg |
37272670 |
T |
|
| Q |
301 |
gtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagtgaaac |
381 |
Q |
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| T |
37272669 |
gtaacaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagtgaaac |
37272589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 37268655 - 37268551
Alignment:
| Q |
277 |
aggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagt |
376 |
Q |
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|||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37268655 |
agggctcagcttctgttatttgtggttgcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacggt |
37268556 |
T |
|
| Q |
377 |
gaaac |
381 |
Q |
| |
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||||| |
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| T |
37268555 |
gaaac |
37268551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 20581012 - 20580779
Alignment:
| Q |
11 |
cagcacaacaaatagctgaaatagcagaaggatcatcagacaaccgtggtttagcacttttgttaccattaattccagccattgcttgggttctgtacaa |
110 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| |||| |||||||| ||| |
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| T |
20581012 |
cagcacaacagatagctgaaatagcagaaggatcatcagacaaccgcggttaagcacttctgttaccattaattccagccatagcttcggttctgttcaa |
20580913 |
T |
|
| Q |
111 |
cattcttcaaccagcacttaaccaaatcaaccgtatgcgtaacgataaaggagttataattggtttaggtcttgggggtgggttagcagcttcagggttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
20580912 |
cattcttcaaccagcacttaaccaaatcaaccgtatgcgtaacgataaaggagttatcattggtttgggtcttggtggtgggttagcagcttcagggttt |
20580813 |
T |
|
| Q |
211 |
gtatcaacacaagatgcaattgctagtgaaatgg |
244 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||| |
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| T |
20580812 |
gtgtcaacacaagatgcaatggctagtgaaatgg |
20580779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 372
Target Start/End: Complemental strand, 39017088 - 39016975
Alignment:
| Q |
259 |
gctgctggtagtgataacaggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaa |
358 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||||| ||||| | |
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| T |
39017088 |
gctgctggaagtgacaacaggggaacacttctgttgtttgttgttgcaccagctatcctttgggtgctgtacaatattttgcagcctgctctcaaccaga |
39016989 |
T |
|
| Q |
359 |
tcaacagaatgaga |
372 |
Q |
| |
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||||||| |||||| |
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| T |
39016988 |
tcaacaggatgaga |
39016975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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