View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_high_20 (Length: 215)
Name: NF8861_high_20
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 40947262 - 40947446
Alignment:
| Q |
13 |
gattatactgcgctgaacttggtaaatgaattggggttacatcttagaatgatttaagtgtttgataagtttatcagaacgcacttttagaaaactgcgt |
112 |
Q |
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| T |
40947262 |
gattctactgcgctgaacttggtaaatgaattggggttacatcttagaatgatttaagtgtttgataagtttatcagaacacacttttagaaaactgcgt |
40947361 |
T |
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| Q |
113 |
gtgctttagaaaaaggatagggggtgtttttgaaattgaaaacctcatgtgctgtttgttttttaactgaagcatatcatgaaat |
197 |
Q |
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| T |
40947362 |
gtgctttagaaaaaggatagggggtgtttttgaaattgaaaacctcatgtgctgtttgttttttaactgaagcatatcatgaaat |
40947446 |
T |
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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 16719607 - 16719777
Alignment:
| Q |
26 |
tgaacttggtaaatgaattggggttacatcttagaatgatttaagtgtttgataagtttatcagaacgcacttttagaaaactgcgtgtgctttagaaaa |
125 |
Q |
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| T |
16719607 |
tgaacttagtaaatgaatagtggttacatcttaaaatgatttgagggttagataagtttatcagaatgctcttttataaaactgcttgtgcttt-ggaaa |
16719705 |
T |
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| Q |
126 |
aggatagggggtgtttttgaaattgaaaacctcatgtgctgtttgttttttaactgaagcatatcatgaaat |
197 |
Q |
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| T |
16719706 |
agggcaaacgatatttttgaaattgaaaacctcatgtgttgttttatttttaactgaaacatatcttgaaat |
16719777 |
T |
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