View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_high_3 (Length: 446)
Name: NF8861_high_3
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 42682768 - 42683170
Alignment:
| Q |
16 |
cattatctgtcctagaaaacaaacaagaaaaacctagtnnnnnnnctcgtcagttttctttttcatcacattctttcgtatcaatacacaattttatttc |
115 |
Q |
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| T |
42682768 |
cattacctgtcctagaaaacaaacaagaaaaacctagtaaaaaaactcgtcagttttctttttcatcacattctttcgtatcaatacacaattttatttc |
42682867 |
T |
|
| Q |
116 |
accatcatcaagaatggaacaagccaacccagggattaaggacatggattatnnnnnnn--gtgacaaatacaagaatgatcaattatgcaacatcttga |
213 |
Q |
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| T |
42682868 |
accatcatcaagaatggaacaagccaacccagggattaagaacatggattataaaaaaaaagtgacaaatacaagaatggtcaattatgcaacatcttga |
42682967 |
T |
|
| Q |
214 |
tccaaatcgtgaacatcttaacattgtttgtttcaattgcaatattggtttttggtttaaggatatggaataccagacaagctaacacagaatgtgagat |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42682968 |
tccaaatcgtgaacgtcttaacattgtttgtttcaattgcaatattggtttttggtttaaggatatggaataccagacaagctaacacagaatgtgagat |
42683067 |
T |
|
| Q |
314 |
ttctctactgggtctcataggtgtctgttgtcaatcgctctcaattctcgcgttctatatctttagcttgttcttgacactcctttttctattctccagc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42683068 |
ttctctactgggtctcataggtgtctgttgtcaatcgctctcaattctcgcgttctatatctttatcttgttcttgacactcctttttctattctccagc |
42683167 |
T |
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| Q |
414 |
caa |
416 |
Q |
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| T |
42683168 |
caa |
42683170 |
T |
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