View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8861_high_4 (Length: 444)

Name: NF8861_high_4
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8861_high_4
NF8861_high_4
[»] chr3 (3 HSPs)
chr3 (17-408)||(39354716-39355104)
chr3 (221-394)||(46911478-46911650)
chr3 (221-408)||(32993142-32993328)
[»] chr2 (2 HSPs)
chr2 (130-411)||(42161165-42161446)
chr2 (214-410)||(16712210-16712405)
[»] chr8 (3 HSPs)
chr8 (222-397)||(40536476-40536650)
chr8 (214-410)||(20670189-20670384)
chr8 (16-75)||(40536814-40536873)
[»] chr7 (1 HSPs)
chr7 (222-313)||(45752864-45752955)
[»] chr4 (1 HSPs)
chr4 (222-313)||(15828618-15828708)
[»] chr1 (2 HSPs)
chr1 (355-411)||(41949597-41949653)
chr1 (352-401)||(43326565-43326615)
[»] chr6 (1 HSPs)
chr6 (142-183)||(26208357-26208398)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 39355104 - 39354716
Alignment:
Q  17 caaagaccggatattccaacttatgtaatacaaaattccatcagggccattgaagaagtcaaagcaatccttagcataaggaaattgtgtgtattggctt 116  Q
    |||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39355104 caaagatcggatattccaacttatgtaatacaaaattccat--gggccattgaagaagtcaaagcaatccttagcataaggaaattgtgtgtattggctg 39355007  T
Q  117 nnnnnnngctatgaatggttggattaaactcaattgtgatgtagtatgtaaaggtaatagggagctttctgaatgtggtgggctttttcatcttcttatg 216  Q
           |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39355006 aaaaagagctatgaatggttggattaaactcaattatgatgtagtgtgtaaaggtaatagggagctttctgaatgtggtgggctttttcatcttcttatg 39354907  T
Q  217 gaagatggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39354906 gaagatggattaagggttttagtcgcaaaattggaacttgtgatgctttgcttattgagatgtggggtctttatttggggcttgatatggcttggaattg 39354807  T
Q  317 ggnnnnnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttct 408  Q
    ||       |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||||    
T  39354806 gg-ttttttctcacctgcttgtttaaaatgacttgaaggtgcttattgatacgattactaacaattgtaaaattaatggaaccatcccttct 39354716  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 221 - 394
Target Start/End: Original strand, 46911478 - 46911650
Alignment:
Q  221 atggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttgggnn 320  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| ||  |  ||||||||||||||||||| |||| || ||||||||| ||||  | |      
T  46911478 atggatcaagggttttagccgcaaaattggagcttgtgatgctctgcatgctgagatgtggggtctttatctgggactggatatggctaggag-agaggg 46911576  T
Q  321 nnnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatg 394  Q
         ||||| || ||||| | | |||||  |||||||||||||| ||| | ||||||||||||||||||||||    
T  46911577 tatatctcacttgattgttgagagtgactcaaaggtgcttattgacatggttactaacaattgtaagattaatg 46911650  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 408
Target Start/End: Original strand, 32993142 - 32993328
Alignment:
Q  221 atggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttgggnn 320  Q
    |||||| ||||||||||| | ||||||||||  |||||||||| ||  |  ||||||||||||||||||| ||||||| ||||||||||||||  | |      
T  32993142 atggatcaagggttttagccacaaaattggagtttgtgatgctctgcatgctgagatgtggggtctttatctggggctggatatggcttggag-agaggg 32993240  T
Q  321 nnnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttct 408  Q
         ||||| || ||||| | | |||||  |||||| ||||||||||| | ||||||||||||||||| |||| |||| | ||||||    
T  32993241 tatgtctcacttgattgttgagagtgactcaaaggtgtttattgatatggttactaacaattgtaagatcaatggaaccattccttct 32993328  T

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Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 130 - 411
Target Start/End: Complemental strand, 42161446 - 42161165
Alignment:
Q  130 aatggttggattaaactcaattgtgatgtagtatgtaaaggtaatagggagctttctgaatgtggtgggctttttcatct-tcttatggaagatggatta 228  Q
    ||||||||| | |||||||||||||||| ||  || ||||||||  |||||||| |||| |||||  |  |||| | ||  ||| ||||||||||||| |    
T  42161446 aatggttgggtgaaactcaattgtgatggagcgtgcaaaggtaaaggggagcttgctgagtgtggcagaattttacgtcaatctgatggaagatggatca 42161347  T
Q  229 agggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttgggnnnnnnnctc 328  Q
    |||| |||| ||||||||||||| |||| |||||| ||  |  |||||||||||||||||||||||||||||||||||||||||| || |       |||    
T  42161346 agggatttaatcgcaaaattggagcttgcgatgctctgcatgctgagatgtggggtctttatttggggcttgatatggcttggag-tgagggtttatctc 42161248  T
Q  329 acctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttctctg 411  Q
    || || ||||| | | |||||  || ||||||||||||||| | ||||||||||| ||||| |||| |||| |||||||||||    
T  42161247 acgtgattgttgagagtgactcaaaagtgcttattgatatggttactaacaattgcaagatcaatggaaccatcccttctctg 42161165  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 214 - 410
Target Start/End: Complemental strand, 16712405 - 16712210
Alignment:
Q  214 atggaagatggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggag 313  Q
    ||||||||||||| ||| | |||||||||||||||||||||||| ||||| ||  |  | ||||||||| ||||||| |||||| |||||||||||||||    
T  16712405 atggaagatggatcaagagatttagtcgcaaaattggaacttgtaatgctctgcatgctaagatgtgggctctttatctggggcatgatatggcttggag 16712306  T
Q  314 ttgggnnnnnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttctct 410  Q
    |  ||       ||||| || |||||   | |||||  || ||||||||||||||| | ||||||||||||||||  |||| |||| ||||||||||    
T  16712305 taagg-gtttatctcacgtgattgttgtgagtgactcaaaagtgcttattgatatggttactaacaattgtaagaccaatggaaccatcccttctct 16712210  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 397
Target Start/End: Complemental strand, 40536650 - 40536476
Alignment:
Q  222 tggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggagttgggnnn 321  Q
    ||||| ||||||||| | |||||||||||| ||||||||||| ||  |  |||||||||||||||||||||||| || ||||||||||||||  | |       
T  40536650 tggatcaagggtttttgccgcaaaattggagcttgtgatgctctgcatgctgagatgtggggtctttatttgggactagatatggcttggag-agagggt 40536552  T
Q  322 nnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaa 397  Q
        ||||| || ||||| | | |||||  |||||||||||||||||| ||||||||||| ||||||| |||||||    
T  40536551 atatctcacttgattgttgagagtgactcaaaggtgcttattgatatggtcactaacaatcgtaagatcaatgaaa 40536476  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 410
Target Start/End: Complemental strand, 20670384 - 20670189
Alignment:
Q  214 atggaagatggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggag 313  Q
    ||||||||||||| ||  | |||||||| |||||||||| |||||||||| |   |  ||||||||||||||||||||||||| ||||||||||||||||    
T  20670384 atggaagatggatcaaaagatttagtcgtaaaattggaatttgtgatgctctacatgctgagatgtggggtctttatttggggtttgatatggcttggag 20670285  T
Q  314 ttgggnnnnnnnctcacctgcttgtttaaaatgacttgaaggtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttctct 410  Q
     || |       ||||| || ||||| | | |||||  || || |||||||||||| | ||||||||||| ||||| |||| |||| ||||||||||    
T  20670284 -tgagggtttatctcacgtgattgttgagagtgactcaaaagttcttattgatatggttactaacaattgcaagatcaatggaaccatcccttctct 20670189  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 40536873 - 40536814
Alignment:
Q  16 tcaaagaccggatattccaacttatgtaatacaaaattccatcagggccattgaagaagt 75  Q
    ||||||||| ||||  ||||||||||| || ||||||| ||| |||||||||||||||||    
T  40536873 tcaaagaccagataacccaacttatgtcatccaaaatttcattagggccattgaagaagt 40536814  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 45752955 - 45752864
Alignment:
Q  222 tggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggag 313  Q
    ||||| |||||||||||||| ||||||||| ||||||||||| ||  |  ||||||||||||||||||| | ||||| ||||||||||||||    
T  45752955 tggatcaagggttttagtcgtaaaattggagcttgtgatgctctgcatgctgagatgtggggtctttatctagggctggatatggcttggag 45752864  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 15828708 - 15828618
Alignment:
Q  222 tggattaagggttttagtcgcaaaattggaacttgtgatgctttgtttattgagatgtggggtctttatttggggcttgatatggcttggag 313  Q
    ||||| ||||||||||| | ||||||| || ||||| ||||| ||| |  ||||||||||| ||||||| ||||||| ||||||||||||||    
T  15828708 tggatcaagggttttagccacaaaattagagcttgtcatgctctgtatgatgagatgtggg-tctttatctggggctagatatggcttggag 15828618  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 41949597 - 41949653
Alignment:
Q  355 gtgcttattgatatgatcactaacaattgtaagattaatgaaaccttcccttctctg 411  Q
    ||||||||||||||||| ||||||||||| ||||| |||| |||| ||| |||||||    
T  41949597 gtgcttattgatatgattactaacaattgcaagatcaatggaaccatccattctctg 41949653  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 43326615 - 43326565
Alignment:
Q  352 aaggtgcttattgatatga-tcactaacaattgtaagattaatgaaacctt 401  Q
    |||||||||||| |||||  | |||||||||||||||||||||||||||||    
T  43326615 aaggtgcttattaatatgggttactaacaattgtaagattaatgaaacctt 43326565  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 26208357 - 26208398
Alignment:
Q  142 aaactcaattgtgatgtagtatgtaaaggtaatagggagctt 183  Q
    |||||||||||||||| || ||||||||||||| ||||||||    
T  26208357 aaactcaattgtgatggagcatgtaaaggtaatggggagctt 26208398  T

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