View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_high_5 (Length: 444)
Name: NF8861_high_5
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 35272401 - 35272733
Alignment:
| Q |
1 |
aaaagaatatacaataataagataaagaaagaaatattataatgcaaggggcatcaatgaagaaaccattcttgggaaacatgattaaagnnnnnnnnnn |
100 |
Q |
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| T |
35272401 |
aaaagaatatacaataataagataaagaaagaaatattataatgcaaggggcatcaatgaagaaaccattcttgggaaacatgattaaagaaaaaactaa |
35272500 |
T |
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| Q |
101 |
nnnnnncagacatgaataattttagaactgacattactaccgaaattgcacatcaagaactgattaatgggtaaagaaagagcaaaatcagacatatata |
200 |
Q |
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| T |
35272501 |
aaaaa-cagacatgaatgattttagaactgacattactaccgaaattgcacatcaagaactgattaatgggtaaagaaagagcaaaatcagacatatata |
35272599 |
T |
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| Q |
201 |
cataccagcaagagtttgtccattattaacttgagcttcattttggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatgcagaaag |
300 |
Q |
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| T |
35272600 |
cataccagcaagagtttgtccattattaacttgagcttcattttggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatgcagaaag |
35272699 |
T |
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| Q |
301 |
atttgaaaactacacagaacacgcacacactgat |
334 |
Q |
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| T |
35272700 |
atttgaaaactacacagaacacacacacactgat |
35272733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 35254563 - 35254658
Alignment:
| Q |
227 |
taacttgagcttcattttggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatgcagaaagatttgaaaactacacagaacac |
322 |
Q |
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| T |
35254563 |
taacatgagcttcatttttgaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacac |
35254658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 425
Target Start/End: Original strand, 35272777 - 35272823
Alignment:
| Q |
378 |
catgcatgcatgcagcgatttttctcacagttcttctttgggattttt |
425 |
Q |
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| T |
35272777 |
catgcatgcatgcagcg-tttttctcacagttcttctttgggattttt |
35272823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 35248066 - 35248160
Alignment:
| Q |
228 |
aacttgagcttcattttggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatgcagaaagatttgaaaactacacagaacac |
322 |
Q |
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| T |
35248066 |
aactcgagcttcatttttgaaaatcttagcagtgtttgacaatcccttcttcttgaagtaatcacacagaaagttttgaaaactacaaagaacac |
35248160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 35279272 - 35279324
Alignment:
| Q |
268 |
aatcctttcttcttgaggtaatcatgcagaaagatttgaaaactacacagaac |
320 |
Q |
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|||||| ||||||||| ||||||||| | |||||| | ||||||||||||||| |
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| T |
35279272 |
aatcctctcttcttgaagtaatcatgaataaagatatcaaaactacacagaac |
35279324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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