View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_low_1 (Length: 577)
Name: NF8861_low_1
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 38129230 - 38128684
Alignment:
| Q |
18 |
atgaagaccaatggtttttgagcaaagaacagtggcttgtacttggtcttcatgcaaaggggtgatgataagtaatggttttgtggtggagggggtgttg |
117 |
Q |
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| T |
38129230 |
atgaagaccaatggtttttgagcaaagaacagtggcttgtacttggtcttcatgcaaaggggtgatgataagtaatggttttgtggtggagggggtgttg |
38129131 |
T |
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| Q |
118 |
aacctagcatttctaataaaggcttgaaaaatagaggtgtatgatgcattggtttgggaatagactatgttggaaacttgatttggttgggtagtatggc |
217 |
Q |
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| T |
38129130 |
aacctagcatttctaataaaggcttgaaaaatagaggtgtatgatgcattggtttgggaatagactatgttggaaacttgatttggttgggtagtatggt |
38129031 |
T |
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| Q |
218 |
ttttaagacactgaagaaaagttacataaatggactcacttgatggggctgcatgagaattagaaacatgtacaagaagaagtataataaaaacagaaag |
317 |
Q |
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| T |
38129030 |
ttttaagacactgaagaaaagtgacataaatggactcacttgatggggctgcatgagaattagaaacatgtacaagaagaagtataataaaaacagaaag |
38128931 |
T |
|
| Q |
318 |
aaatggaacagaatttgatttatccattgcaattctggaaatggtagtaaagagacataggataagggtggttgaagttaggactttatacagaagacat |
417 |
Q |
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| T |
38128930 |
aaatggaacagaatttgatttatccattgcaattctggaaatggtagtaaagagacataggataagggtggttgaagttaggactttatacagaagacat |
38128831 |
T |
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| Q |
418 |
attggaccacaaaagtttgtgtctttggtgtgtattaattttagtgtatccagctcattcaagtctatctggcaagcatgccaaaaatgctacaagtata |
517 |
Q |
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| T |
38128830 |
attggaccacaaaagtttgtgtctttggtgtgtattaattttagtgtatccagctcattcaagtctatctggcaagcatgccaaaaatgctacaagtata |
38128731 |
T |
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| Q |
518 |
catgtcattgttttttctacagtaatcattttgtagattattgatgt |
564 |
Q |
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| T |
38128730 |
catgtcattgttttttctacagtaatcattttctagattattgatgt |
38128684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 156 - 382
Target Start/End: Original strand, 487373 - 487591
Alignment:
| Q |
156 |
gtatgatgcattggtttgggaatagactatgttggaaacttgatttggttgggtagtatggcttttaagacactgaagaaaagttacataaatggactca |
255 |
Q |
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| T |
487373 |
gtatgatgcattggtttgggaatagatt--gttgaacacttgatattgtgcagttgtgtggtttttcagacaatgaacaaaagttacataaatgcactcg |
487470 |
T |
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| Q |
256 |
cttgatggggctgcatgagaattagaaacatgtacaagaagaagtataataaaaacagaaagaaatggaacagaatttgatttatccattgcaattctgg |
355 |
Q |
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| T |
487471 |
cttgatggggctacatgataattagaaacatgt------agaagtataccaataacagaaagaaattgcagaacatttgatttatccgttgcaattctgg |
487564 |
T |
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| Q |
356 |
aaatggtagtaaagagacataggataa |
382 |
Q |
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| T |
487565 |
aaatggtaataaagagacataagataa |
487591 |
T |
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