View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8861_low_10 (Length: 361)
Name: NF8861_low_10
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_10 |
 | |
|
| [»] scaffold0127 (1 HSPs) |
| | |
|
| [»] scaffold0620 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 5746680 - 5746980
Alignment:
| Q |
20 |
attatgatgttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgag |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5746680 |
attatggtgttttttcttcggtggatcaggggtagagaggtggtggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgag |
5746779 |
T |
|
| Q |
120 |
gtgaagaggatgtttgatttgtaggggtgnnnnnnnggagtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagta |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5746780 |
gtgaagaggatgtttgatttggaggggtgtttttttggagtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagta |
5746879 |
T |
|
| Q |
220 |
tgttttaggcggtgaaattgattttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgacatgtgtaattcgtgtctttattgatg |
319 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5746880 |
tgttttaggcggtgaaattggttttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatg |
5746979 |
T |
|
| Q |
320 |
t |
320 |
Q |
| |
|
| |
|
|
| T |
5746980 |
t |
5746980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 31611413 - 31611661
Alignment:
| Q |
20 |
attatgatgttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgag |
119 |
Q |
| |
|
|||||| |||||||||||| | ||| | |||||||||||| || ||| ||||||||||||||||| ||| |||||||||||||||||| ||||| ||| |
|
|
| T |
31611413 |
attatggtgttttttcttcagcggaccgagggtagagaggtagtgaaagccgaaggagtgttggaattgaactttttgggtgtggcttaaccatggggag |
31611512 |
T |
|
| Q |
120 |
gtgaagaggatgtttgatttgtaggggtgnnnnnnnggagtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||| |||| || |||||||| | |||||||| |
|
|
| T |
31611513 |
gtgaagaggatgtttgattgcgaggggtgtttttttggagtgagtagcggcaatggatgcttatggatttcgtttc-cattggttgttcgtgatggagtt |
31611611 |
T |
|
| Q |
220 |
tgttttaggcggtgaaattgattttggtggttgtggggttcatgggtgtt |
269 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
31611612 |
tgttttaggcggtgaaagtgattttggtggttgtggggttaatgggtgtt |
31611661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 34092886 - 34093170
Alignment:
| Q |
29 |
ttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgaggtgaagagg |
128 |
Q |
| |
|
|||||||||||||||| | || |||||||||| |||| | ||||| |||||||||| | ||| ||||||||| |||| ||||| |||||||||||| |
|
|
| T |
34092886 |
ttttttcttcggtggaccgggagtagagaggtagtggatgcaaaaggactgttggaatatgactttgtgggtgtggtttaaccatggggaggtgaagagg |
34092985 |
T |
|
| Q |
129 |
atgtttgatttgtaggggtgnnnnnnnggagtgagtagcggcgatgggtgcttatggatttagtttttcag-tggttgtttgcgatggagtatgttttag |
227 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||| ||| ||||| || | ||||||| |||||||| |
|
|
| T |
34092986 |
atgtttgattgcgaggggtgtttctttggagtgagtagcggcgatgggtgcttgtggattttgttt--caggtggttatt-gtgatggagattgttttag |
34093082 |
T |
|
| Q |
228 |
gcggtgaaattgattttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgacatgtgtaattcgtgtctttattg |
316 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||| |||||| || |||||||||||| |
|
|
| T |
34093083 |
gcggtgaaattgattttg-tggttgtagggttcatgggtgttgaaggcaggtcttaggtgggtgatgtgtgtattttgtgtctttattg |
34093170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 21029717 - 21029778
Alignment:
| Q |
27 |
tgttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatag |
88 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
21029717 |
tgttttttcctcggtggaccgggggtagagaggtggtggaagccgaatgagtgttggaatag |
21029778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 4554415 - 4554356
Alignment:
| Q |
159 |
gtgagtagcgg-cgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagt |
218 |
Q |
| |
|
||||||||||| |||||| || |||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
4554415 |
gtgagtagcggacgatggatgtttatggattttgtttt-cagtggtcgtttgcgatggagt |
4554356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 27 - 320
Target Start/End: Complemental strand, 21575 - 21282
Alignment:
| Q |
27 |
tgttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgaggtgaaga |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21575 |
tgttttttcttcggtggatcaggggtagagaggtggtggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgaggtgaaga |
21476 |
T |
|
| Q |
127 |
ggatgtttgatttgtaggggtgnnnnnnnggagtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagtatgtttta |
226 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21475 |
ggatatttgatttggaggggtgtttttttggagtgagtagcggcgatgggtgcttatggatttagtttttcagcggttgtttgcgatggagtatgtttta |
21376 |
T |
|
| Q |
227 |
ggcggtgaaattgattttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgacatgtgtaattcgtgtctttattgatgt |
320 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21375 |
ggcggtgaaattggttttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgacgtgtgtaattcgtgtctttattgatgt |
21282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 4637403 - 4637167
Alignment:
| Q |
30 |
tttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgaggtgaagagga |
129 |
Q |
| |
|
||||||||||||||| || |||| |||||| | |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4637403 |
tttttcttcggtggaccaagggttgagaggcggtggaagccgaaggagtgttggaataggactttttgggtgtggcttaatcatggtgaggtgaagagga |
4637304 |
T |
|
| Q |
130 |
tgtttgatttgtaggggtgnnnnnnnggagtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagtatgttttaggc |
229 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||| ||||||| |||| |||||| || || ||| ||||||||||| ||||||||| |
|
|
| T |
4637303 |
tgtttgatttagaggggtg-ttttgtggagtgagtagcggcgatggatgcttattaattttgttttttaggggatgtctgcgatggagtttgttttagga |
4637205 |
T |
|
| Q |
230 |
ggtgaaattgattttggtggttgtggggttcatgggtg |
267 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
4637204 |
ggtgaaattggttttggtggttttggggttcataggtg |
4637167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 63 - 318
Target Start/End: Complemental strand, 36602254 - 36601999
Alignment:
| Q |
63 |
tggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtg-aggtgaagaggatgtttgatttgtaggggtgnnnnnnn--ggag |
159 |
Q |
| |
|
|||||| |||| |||||||||||| | |||||||||||||||||| ||||| | |||||||||||||| |||||| ||||||| |||| |
|
|
| T |
36602254 |
tggaagccgaaagagtgttggaattagactttttgggtgtggcttaaccatggaggaggtgaagaggatggttgattgcgaggggtgttttattttggag |
36602155 |
T |
|
| Q |
160 |
tgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagtatgttttaggcggtgaaattgattttggtggttgtggggtt |
259 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||| | ||||||||| || |||||| |||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
36602154 |
tgagtagcggcgatgggtggttatgaattttgtttt-cggtggttgttcacggtggagtttgttttagacggtgaaattggtcttggtggttgtggggtt |
36602056 |
T |
|
| Q |
260 |
catgggtgttgaaggtaggtcttaggtaggtgacatgtgtaattcgtgtctttattgat |
318 |
Q |
| |
|
||||||||||| || ||||||||| |||||| ||||| ||||| |||||| |||| |
|
|
| T |
36602055 |
tatgggtgttgatgg--ggtcttagggaggtgatgggtgtatttcgtatctttactgat |
36601999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 823295 - 823175
Alignment:
| Q |
159 |
gtgagtagcggcgatgggtgcttatggatttagtttttcagtggttg-tttgcgatggagtatgttttaggcggtgaaattgattttggtggttgtgggg |
257 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| | ||||||||||||||| |||| |||||||| ||||||||| |||||| || |||||||||| || | |
|
|
| T |
823295 |
gtgagtagaggcgaagggtggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaattttggtgggtgatgtc |
823196 |
T |
|
| Q |
258 |
ttcatgggtgttgaaggtagg |
278 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
823195 |
ctcatgggtgttgaaggtagg |
823175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 13018185 - 13018094
Alignment:
| Q |
159 |
gtgagtagcggcgatgggtgcttatggatttagtttttcagtggttg-tttgcgatggagtatgttttaggcggtgaaattgattttggtgg |
249 |
Q |
| |
|
|||||||| ||| ||||||| | |||||| | ||||| |||||||| |||| |||||||| ||||||||| |||||| || |||||||||| |
|
|
| T |
13018185 |
gtgagtagtggcaatgggtgatcatggatatcattttttagtggttgttttgtgatggagtctgttttaggtggtgaagttaattttggtgg |
13018094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 31424325 - 31424359
Alignment:
| Q |
27 |
tgttttttcttcggtggatcaggggtagagaggtg |
61 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31424325 |
tgttttttcttcggtggatcaggagtagagaggtg |
31424359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 24712729 - 24712765
Alignment:
| Q |
30 |
tttttcttcggtggatcaggggtagagaggtgttgga |
66 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
24712729 |
tttttcttcggtggatcaggggtagagcggtggtgga |
24712765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 33283966 - 33283706
Alignment:
| Q |
29 |
ttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgaggtgaagagg |
128 |
Q |
| |
|
||||||||| |||| ||||||| ||||||| || |||||| |||||||||||||||||| ||||||||||||||| || |||||||||||| ||||| |
|
|
| T |
33283966 |
ttttttctttggtg-atcagggatagagagatggtggaagccgaaggagtgttggaatatgtctttttgggtgtggctcaaccatggtgaggtggagagg |
33283868 |
T |
|
| Q |
129 |
atgtttgatttgtaggggtgnnnnnnnggagtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagtatgttttagg |
228 |
Q |
| |
|
||||||||||| ||| ||| |||||| ||||| || |||||||||||||||||| ||||| |||||||||| |||| |||| ||||||||| |
|
|
| T |
33283867 |
atgtttgatttagaggagtgtttttt-ggagtgtgtagcagcaatgggtgcttatggatttcgtttta-agtggttgttcgcgacagagtttgttttagg |
33283770 |
T |
|
| Q |
229 |
cggtgaaattgattttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtga |
292 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
33283769 |
cggcgaaattgattttggtggtagtggggttcatgggtgttgaaattaggtcttggataggtga |
33283706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 41231641 - 41231567
Alignment:
| Q |
159 |
gtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagtatgttttaggcggtgaa |
235 |
Q |
| |
|
|||||||| ||||||||||| ||||||| | | |||| |||||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
41231641 |
gtgagtagtggcgatgggtggttatggaatcattttt--agtggtagtttgcgatggagtctgttttaggaggtgaa |
41231567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 8220 - 8504
Alignment:
| Q |
29 |
ttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgaggtgaagagg |
128 |
Q |
| |
|
|||||||||||||||| | || |||||||||| |||| | ||||| |||||||||| | ||| ||||||||| |||| ||||| |||||||||||| |
|
|
| T |
8220 |
ttttttcttcggtggaccgggagtagagaggtagtggatgcaaaaggactgttggaatatgactttgtgggtgtggtttaaccatggggaggtgaagagg |
8319 |
T |
|
| Q |
129 |
atgtttgatttgtaggggtgnnnnnnnggagtgagtagcggcgatgggtgcttatggatttagtttttcag-tggttgtttgcgatggagtatgttttag |
227 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||| ||| ||||| || | ||||||| |||||||| |
|
|
| T |
8320 |
atgtttgattgcgaggggtgtttctttggagtgagtagcggcgatgggtgcttgtggattttgttt--caggtggttatt-gtgatggagattgttttag |
8416 |
T |
|
| Q |
228 |
gcggtgaaattgattttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgacatgtgtaattcgtgtctttattg |
316 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||| |||||| || |||||||||||| |
|
|
| T |
8417 |
gcggtgaaattgattttg-tggttgtagggttcatgggtgttgaaggcaggtcttaggtgggtgatgtgtgtattttgtgtctttattg |
8504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 43344880 - 43344582
Alignment:
| Q |
20 |
attatgatgttttttcttcggtggatca--ggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtg |
117 |
Q |
| |
|
|||||| ||||||||||||| |||| | |||||||||||||| ||||| | | |||||||||||||| || |||||||||||||||||| || || |
|
|
| T |
43344880 |
attatggtgttttttcttcgatggaccgagggggtagagaggtggtggaaaccaatggagtgttggaatataactttttgggtgtggcttaaccagggca |
43344781 |
T |
|
| Q |
118 |
aggtgaagaggatgtttgatttgtaggggtgnnnnnnn-ggagtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatgga |
216 |
Q |
| |
|
|| |||||||||||||||||| || |||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||| |
|
|
| T |
43344780 |
ag-tgaagaggatgtttgattgtgagaggtgttttttctggagcgagtagcggcgatgggtgcttatagatttcgtttttg-gtggttgttcacgatgga |
43344683 |
T |
|
| Q |
217 |
gtatgttttaggcggtgaaattgattttggtggttgtggggttcat-gggtgttgaaggtaggtcttaggtaggtgacatgtgtaattcgtgtctttatt |
315 |
Q |
| |
|
|| |||||||||||||| |||| | || ||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
43344682 |
gtttgttttaggcggtggtattggtgtttgtggttgtggggttcattgggtgttgaaggcaggtcttaggtaggtgacgtgtgtattttgtgtctttatt |
43344583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 1820002 - 1819732
Alignment:
| Q |
20 |
attatgatgttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgag |
119 |
Q |
| |
|
|||||| ||||| |||||||| | ||| |||||| | |||| || ||| |||||||||| | |||| ||| |||| |||||||||||| ||||| ||| |
|
|
| T |
1820002 |
attatggtgtttcttcttcggcgaatcgggggtataaaggtagtgaaagtcgaaggagtgattgaattgaacattttaggtgtggcttaaccatggggag |
1819903 |
T |
|
| Q |
120 |
gtgaagaggatgtttgatttgtaggggtgnnnnnnnggagtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagta |
219 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||||||||||||||| |||||||||| |||| || |||||||||||| |||||| |
|
|
| T |
1819902 |
gtgaagaggatgtttgattgcgaggact-tttttttggagtgagtagcggcgatgggtatttatggatttcgtttc-caatggttgtttgcgttggagtt |
1819805 |
T |
|
| Q |
220 |
tgttttaggcggtgaaattgattttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtga |
292 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1819804 |
tgttttaggtagtgaaattggtttttgtggttatggggttcatgggtgttgaaggtaggtcttaagtaggtga |
1819732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 158 - 292
Target Start/End: Original strand, 30663197 - 30663329
Alignment:
| Q |
158 |
agtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagtatgttttaggcggtgaaattgattttggtggttgtgggg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||| | |||| |||| |||||||||||||||| |
|
|
| T |
30663197 |
agtgagtagcggcgatgggtgcttatggattttgttttt-agtggttgtttgctatggagtttgttttag-ctgtgatattggttttggtggttgtgggc |
30663294 |
T |
|
| Q |
258 |
ttcatgggtgttgaaggtaggtcttaggtaggtga |
292 |
Q |
| |
|
|| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
30663295 |
tttatgggtgttgatggtaggtcttagggaggtga |
30663329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 2613858 - 2613797
Alignment:
| Q |
27 |
tgttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatag |
88 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| ||| || |||| |||||||||||||| |
|
|
| T |
2613858 |
tgttttttcctcggtggactaggggtagagaggtggtggtagccgaatgagtgttggaatag |
2613797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 28171479 - 28171528
Alignment:
| Q |
169 |
gcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagt |
218 |
Q |
| |
|
|||||| ||| |||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
28171479 |
gcgatgagtgtttatggtttttgtttttcagtggttgtttgcaatggagt |
28171528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 48 - 316
Target Start/End: Complemental strand, 8987914 - 8987649
Alignment:
| Q |
48 |
ggggtagagaggtgttggaaggcgaaggagtgttggaatagaaatttttgggtgtggcttaatcatggtgaggtgaagaggatgtttgatttgtaggggt |
147 |
Q |
| |
|
||||||||||||| || ||| | |||||||||| ||||| | ||||||||||||| |||| ||||| ||| |||||||||||||||||| | ||| |
|
|
| T |
8987914 |
ggggtagagaggtagtgaaagccaaaggagtgttcaaataggactttttgggtgtggtttaaccatggggagatgaagaggatgtttgattgcgcgaggt |
8987815 |
T |
|
| Q |
148 |
gnnnnnnnggagtgagtagcggcgatgggtgcttatggatttagtttttcagtggttgtttgcgatggagtatgttttaggcggtgaaattgattttggt |
247 |
Q |
| |
|
| ||||||||||||||||||| ||| |||||||||| |||| |||||||||| | ||| |||| | ||| |||||||||||||| ||||||| |
|
|
| T |
8987814 |
gtttctttggagtgagtagcggcgatgagtggttatggatttcgtttca-agtggttgttgg-gatagagtttcttt-aggcggtgaaattggttttggt |
8987718 |
T |
|
| Q |
248 |
ggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgacatgtgtaattcgtgtctttattg |
316 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
8987717 |
ggtggtggggttcatgggtgttgaaggtaggtcttaggtgggtgctgtgtgtatttcgtgtctttattg |
8987649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 38642389 - 38642438
Alignment:
| Q |
220 |
tgttttaggcggtgaaattgattttggtggttgtggggttcatgggtgtt |
269 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||||||| |||| |
|
|
| T |
38642389 |
tgttttaggcggtgaaattggttttggtagttgtgggattcatggatgtt |
38642438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 17819644 - 17819534
Alignment:
| Q |
180 |
ttatggatttagtttttcagtggttgtttgcgatggagtatgttttaggcggtgaaattgattttggtggttgtggggttcatgggtgttgaaggtaggt |
279 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||| || |||||| |||||| ||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
17819644 |
ttatggatttcgtttt-cagtggttgtttgcgatggagtttgatttaggtggtgaagttggttttggtggttgtgttctt-atgggtgttgaaggtaggt |
17819547 |
T |
|
| Q |
280 |
cttaggtaggtga |
292 |
Q |
| |
|
|| | ||||||| |
|
|
| T |
17819546 |
tttggttaggtga |
17819534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 31503177 - 31503090
Alignment:
| Q |
205 |
gtttgcgatggagtatgttttaggcggtgaaattgattttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtga |
292 |
Q |
| |
|
|||||||||||||| || |||||| || ||| ||| ||||||||||| | | ||||| |||||||||||||||||| |||| |||| |
|
|
| T |
31503177 |
gtttgcgatggagtttgatttaggtggcgaagttggttttggtggttcttgttctcatgcgtgttgaaggtaggtcttgggtatgtga |
31503090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 2877923 - 2877971
Alignment:
| Q |
192 |
tttttcagtggttgttt-gcgatggagtatgttttaggcggtgaaattg |
239 |
Q |
| |
|
|||||||| |||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
2877923 |
tttttcagaggttgttttgcgatggagtttgatttaggcggtgaaattg |
2877971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 22200091 - 22200159
Alignment:
| Q |
20 |
attatgatgttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatag |
88 |
Q |
| |
|
|||||| ||||||||| |||||||| | ||||||| | |||| |||||| ||| |||||||||||||| |
|
|
| T |
22200091 |
attatggtgttttttcctcggtggaccgggggtagtgtggtggtggaagctgaatgagtgttggaatag |
22200159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 22239760 - 22239828
Alignment:
| Q |
20 |
attatgatgttttttcttcggtggatcaggggtagagaggtgttggaaggcgaaggagtgttggaatag |
88 |
Q |
| |
|
|||||| ||||||||| |||||||| |||||||| |||||| | |||| ||| |||||||||||||| |
|
|
| T |
22239760 |
attatggtgttttttcctcggtggaccaggggtattgaggtggtagaagctgaatgagtgttggaatag |
22239828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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