View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_low_11 (Length: 358)
Name: NF8861_low_11
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 31605876 - 31606218
Alignment:
| Q |
1 |
gtgcaaaaaatgaaaatattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccgattaagaacatgtacatcat |
100 |
Q |
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| T |
31605876 |
gtgcgaaaaatgaaagtattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccgattaagaacatgtacatcat |
31605975 |
T |
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| Q |
101 |
gcatccaaaaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccannnnnnnatgaactcactttgccccataactgatggtcctgct |
200 |
Q |
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| T |
31605976 |
gcatccaaaaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccatttttttatgaactcactttgccccataactgatggtcctgct |
31606075 |
T |
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| Q |
201 |
attatgccagcctgaatacatttcgaaaacaaaagagtttattagcatgttttacataaggatacattctcaaagaaaatgctaaagataagaaattaat |
300 |
Q |
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| T |
31606076 |
attatgccagcctgaatacatttcgaaaacaaaagagtttattagcatgttttacataaggatacattctcaaagaaaatgctaaagataagaaattaat |
31606175 |
T |
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| Q |
301 |
ccagttttaaaatttcacatgatacttatgtagtataaaattt |
343 |
Q |
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| T |
31606176 |
ccagttttaaaatttcacatgatacttatgtagtataaaattt |
31606218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 31596117 - 31596380
Alignment:
| Q |
6 |
aaaaatgaaaatattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccgattaagaacatgtacatcatgcatc |
105 |
Q |
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| T |
31596117 |
aaaaatgaaaatattccaattgcccaagctcttttccctgatcttataacaatacctagatcgatttttactccaattaagaacaagaacagcatgcacc |
31596216 |
T |
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| Q |
106 |
caaaaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccannnnnnnatgaactcactttgccccataactgatggtcctgctattat |
205 |
Q |
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| T |
31596217 |
cataaaatgagattgtctcacttatgtagaatgttcttggtgggaatagccattttcttataaactcgctttctcccagaaacgacggtcctaatatcaa |
31596316 |
T |
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| Q |
206 |
gccagcctgaatacatttcgaaaacaaaagagtttattagcatgttttacataaggatacattc |
269 |
Q |
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| T |
31596317 |
gccagcctgaatacatttcaaaaacaaaacaatttttcaacatgttttacataaggaaacattc |
31596380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 254
Target Start/End: Original strand, 31580256 - 31580506
Alignment:
| Q |
4 |
caaaaaatgaaaatattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccgattaagaacatgtacatcatgca |
103 |
Q |
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| T |
31580256 |
caaaaaatgaaaatgttccaattgcccaagcttttttccctgatcttgtaacaagacttagatcgatttttactccaattaagaacaagaacatcattat |
31580355 |
T |
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| Q |
104 |
tccaaaaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccannnnnnnatgaactcactttgccccataactgatggtcctgctatt |
203 |
Q |
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| T |
31580356 |
cccaaaatatgagattgtctggctaatgaagaatgttttttgtggaaatatccatttttttatgagctcactttgcccgaaaactgatggacctagtacc |
31580455 |
T |
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| Q |
204 |
atgccagcctgaatacatttcgaaaacaaaagagtttattagcatgtttta |
254 |
Q |
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| T |
31580456 |
aagccagcctgaatacatttcaaaaacaaaagaattaattagcatgtttta |
31580506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 31564718 - 31564963
Alignment:
| Q |
9 |
aatgaaaatattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccgattaagaacatgtacatcatgcatccaa |
108 |
Q |
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||||||| ||||||||| |||||||||||||||||| ||||| | | | ||| ||||||| | | ||| || ||||| || |||||||||| |||| |
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| T |
31564718 |
aatgaaactattccaattgcccaagcttttttccctaatcttgtcataatagttacatcgattctaactccaatcaagaaattgaacatcatgcacccaa |
31564817 |
T |
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| Q |
109 |
aaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccannnnnnnatgaactcactttgccccataactgatggtcctgctattatgcc |
208 |
Q |
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| T |
31564818 |
aatatgcgattgtctggcatatgtaaaatgtttttggtgggaatagccatttttttagcaactcactttgcccgataatagatggtccaagcatcatgcc |
31564917 |
T |
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| Q |
209 |
agcctgaatacatttcgaaaacaaaagagtttattagcatgtttta |
254 |
Q |
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| T |
31564918 |
accctgaatacatttgaaaaacaaaagagttaactatcatgtttta |
31564963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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