View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_low_14 (Length: 331)
Name: NF8861_low_14
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 32516424 - 32516626
Alignment:
| Q |
1 |
aaggaaatctttcggggtccattttccgttatccattaagcaatcaaagtcattaagaagggtttttgttactgtgattaaccgacactaattatgtgta |
100 |
Q |
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| T |
32516424 |
aaggaaatctttcggggtccattttccgttatccattaagcaatcaaagtcattaagaagggtttttgttactgtgattaaccgacactaattatgtgta |
32516523 |
T |
|
| Q |
101 |
atattttagaaatttcatgatacgataagatttcccaacattttcatgtggggcaaacatacttttcacacgtcacttttccacatttgcttaacttatt |
200 |
Q |
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| T |
32516524 |
atattttagaaatttcatgatacgataagatttcccaacattttcatgtggggcaaacatacttttcacacgtcacttttccacattttcttaacttatt |
32516623 |
T |
|
| Q |
201 |
atc |
203 |
Q |
| |
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||| |
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| T |
32516624 |
atc |
32516626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 32516685 - 32516741
Alignment:
| Q |
257 |
aaacagccaatattattaacacaagccggcgtaagacacaccgagcaaggtaaaaag |
313 |
Q |
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| T |
32516685 |
aaacagccaatattattaacataagccggcgtaagacacaccgagcaaggtaaaaag |
32516741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 35225018 - 35225070
Alignment:
| Q |
257 |
aaacagccaatattattaacacaagccggcgtaagacacaccgagcaaggtaa |
309 |
Q |
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| T |
35225018 |
aaacagccaatattattaacacaagctggcataagaagcaccgagcaaggtaa |
35225070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 38864801 - 38864754
Alignment:
| Q |
257 |
aaacagccaatattattaacacaagccggcgtaagacacaccgagcaag |
305 |
Q |
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| T |
38864801 |
aaacagccaa-attattaaatcaagccggcataagacacaccgagcaag |
38864754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 32546742 - 32546690
Alignment:
| Q |
260 |
cagccaatattattaacacaagccggcgtaagacacaccgagcaaggtaaaaa |
312 |
Q |
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| T |
32546742 |
cagccaatattattaactcaagccggcgtaagacgcacggagcttggtaaaaa |
32546690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 43401877 - 43401836
Alignment:
| Q |
257 |
aaacagccaatattattaacacaagccggcgtaagacacacc |
298 |
Q |
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||||||||||||||||||| | ||||||||||||||||||| |
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| T |
43401877 |
aaacagccaatattattaaatccagccggcgtaagacacacc |
43401836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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