View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_low_17 (Length: 285)
Name: NF8861_low_17
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_17 |
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| [»] scaffold0259 (1 HSPs) |
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| [»] scaffold0179 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 17528082 - 17527924
Alignment:
| Q |
3 |
aaatccgtcagtattgaaaccaaatccgccagtaatgtaatgcaatttgannnnnnnncgcggatactccttctcagtagctctcattcacaacaaacat |
102 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
17528082 |
aaatccgtcagtattgaaatcaaatccgccagtaatgtaatgcaatttgattttttttcaccgatactccttctcagtagctctcattcacaacaaacat |
17527983 |
T |
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| Q |
103 |
catctctctaaaacaattctctaccatcttactaaatttcttcaacatttttccacaca |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17527982 |
catctctctaaaacaattctctaccatcttactaaatttcttcaacattttcccacaca |
17527924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 41378825 - 41378982
Alignment:
| Q |
3 |
aaatccgtcagtattgaaaccaaatccgccagtaatgtaatgcaatttgannnnnnnncgcggatactccttctcagtagctctcattcacaacaaacat |
102 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
41378825 |
aaatccgtcagtattgaaatcaaatccgtcagtaatgtaatgcaatttgattttttt-caccgatactccttctcagtagctctcattcacaacaaacat |
41378923 |
T |
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| Q |
103 |
catctctctaaaacaattctctaccatcttactaaatttcttcaacatttttccacaca |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41378924 |
catctctctaaaacaattctctaccatcttactaaatttcttcaacatttttccacaca |
41378982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 7580 - 7737
Alignment:
| Q |
3 |
aaatccgtcagtattgaaaccaaatccgccagtaatgtaatgcaatttgannnnnnnncgcggatactccttctcagtagctctcattcacaacaaacat |
102 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |
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| T |
7580 |
aaatccgtcagtattgaaatcaaatccgccagtaatgtaatgcaatttgattttttccagtg-atactccttctcagtagctctcattcacaacaaacat |
7678 |
T |
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| Q |
103 |
catctctctaaaacaattctctaccatcttactaaatttcttcaacatttttccacaca |
161 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7679 |
catctctctaaaacaattctttaccatcttactaaatttcttcaacatttttccacaca |
7737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 155 - 265
Target Start/End: Complemental strand, 23608 - 23497
Alignment:
| Q |
155 |
ccacacaccacacatttatctctcccacaatccaattacacacttctctctaacctaatttctct-ctcctctcatattccagactcatatacgatttca |
253 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
23608 |
ccacacgccacacatttatctctcccacaatccaattacacacttttctctaacctaatttctctcctcctctcatattccagactcatacacgatttca |
23509 |
T |
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| Q |
254 |
caccaccacact |
265 |
Q |
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|||||||||||| |
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| T |
23508 |
caccaccacact |
23497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 162 - 265
Target Start/End: Original strand, 11514 - 11618
Alignment:
| Q |
162 |
ccacacatttatctctcccacaatccaattacacacttctctctaacctaatttctct-ctcctctcatattccagactcatatacgatttcacaccacc |
260 |
Q |
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|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
11514 |
ccacacatttatctctcccacaatccaattacacaattttctctaacctaatttctctcctcctctcatattccagactcatacacgatttcacaccacc |
11613 |
T |
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| Q |
261 |
acact |
265 |
Q |
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||||| |
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| T |
11614 |
acact |
11618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 31392925 - 31392766
Alignment:
| Q |
3 |
aaatccgtcagtattgaaaccaaatccgccagtaatgtaatgcaatttgannnnnnnncgcggatactccttctcagtagc-tctcattcacaacaaaca |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||| ||||||||||| ||||||||||| |||||| |
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| T |
31392925 |
aaatccgtcagtatttaaaccaaatccgccagtaatgtaatgcaatttgatttttt--caccgatactctttctcagtagcctctcattcacagcaaaca |
31392828 |
T |
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| Q |
102 |
tcatc--tctctaaaacaattctctaccatcttactaaatttcttcaacatttttccacaca |
161 |
Q |
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|||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
31392827 |
tcattcatctctcaaacaattctctaccatgttattaaatttcttcaacatttttccacaca |
31392766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 37440838 - 37440922
Alignment:
| Q |
77 |
cagtagctctcattcacaacaaacatcatctctctaaaacaattctctaccatcttactaaatttcttcaacatttttccacaca |
161 |
Q |
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|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37440838 |
cagtagctctaattcacaacaaacatcatctctcaaaaacaattctctaccatcttactaaatttcttcaacatttttccacaca |
37440922 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 41073790 - 41073949
Alignment:
| Q |
3 |
aaatccgtcagtattgaaaccaaatccgccagtaatgtaatgcaatttgannnnnnnncgcggatactccttctcagtagc-tctcattcacaacaaaca |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| | | | | ||||||| ||||||||||| ||||||||||| |||||| |
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| T |
41073790 |
aaatccgtcagtatttaaaccaaatccgccagtaatgtaatgcaatcttatttttt--caccgatactctttctcagtagcctctcattcacagcaaaca |
41073887 |
T |
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| Q |
102 |
tcatc--tctctaaaacaattctctaccatcttactaaatttcttcaacatttttccacaca |
161 |
Q |
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|||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
41073888 |
tcattcatctctcaaacaattctctaccatgttattaaatttcttcaacatttttccacaca |
41073949 |
T |
|
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