View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8861_low_20 (Length: 245)
Name: NF8861_low_20
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 16909183 - 16909393
Alignment:
| Q |
14 |
ttggtgttgtaaccatttcaattttgaatgttaacaatgccacaatttccgacatccgtggtctcaaatgtgcatgaggttgcaggcataagagagccac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16909183 |
ttggtgttgtaaccatttcaattttgaatgttaacaatgccacaatttccgacatccgtggtctcaaatgtgcatgaggttgcaggcataagagagccac |
16909282 |
T |
|
| Q |
114 |
atgggttgcttgcataacatccttttccacaaatccatcttgtttcagctttggatcaacaagatctaataaacttgatttctcgtataatttccatgcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16909283 |
atgggttgcttgcataacatccttttccacaaatccatcttgtttcagctttggatcaacaagatctaataaacttgatttctcatataatttccatgcc |
16909382 |
T |
|
| Q |
214 |
tatatcacgag |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
16909383 |
tatatcacgag |
16909393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 52601955 - 52601799
Alignment:
| Q |
14 |
ttggtgttgtaaccatttcaattttgaatgttaacaatgccacaatttccgacatccgtggtctcaaatgtgcatgaggttgcaggcataagagagccac |
113 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| ||||| | ||||| ||||| |||| || ||| || || |||||||| | ||||| |
|
|
| T |
52601955 |
ttggtgttgtaaccatatcaattttaaatgttaacaatgctacaatctgtgacatagcaggtcttaaatctggatgtggctgaaggcataaaaaggccac |
52601856 |
T |
|
| Q |
114 |
atgggttgcttgcataacatccttttccacaaatccatcttgtttcagctttggatc |
170 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||| |||| | || | ||||||||||||| |
|
|
| T |
52601855 |
atggaatgcttgcataacatctttttctacatatcctttttctatcagctttggatc |
52601799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University