View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_low_22 (Length: 240)
Name: NF8861_low_22
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 24947844 - 24947656
Alignment:
| Q |
18 |
atatgttccattttaatcaacagctcttgtggtatatatttccttaatttaattatataaatagcttactttttatgaccgtaagtagttctannnnnnn |
117 |
Q |
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| T |
24947844 |
atatgttccattttaatcaacagctcttgtggtatatatttccttaatttaattatataaatagcttactttttatgaccgtaagtagttctattttttt |
24947745 |
T |
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| Q |
118 |
caaaagaccaaagaatgatatattaacaaacaaggttaccttggtgtac------tgaaaactacgcaccaaaataacagaaacataca |
200 |
Q |
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| T |
24947744 |
caaaagaccaaagaatgatatattaacaaacaaggttaccttggtgtactgaaagtgaaaactacgcaccaaaataacagaaacataca |
24947656 |
T |
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