View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8861_low_23 (Length: 240)

Name: NF8861_low_23
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8861_low_23
NF8861_low_23
[»] chr4 (3 HSPs)
chr4 (13-83)||(11412139-11412209)
chr4 (153-208)||(11412309-11412364)
chr4 (123-165)||(11412250-11412292)
[»] chr3 (1 HSPs)
chr3 (12-60)||(29521608-29521656)
[»] chr8 (1 HSPs)
chr8 (172-223)||(35545105-35545156)
[»] chr1 (1 HSPs)
chr1 (178-223)||(16936783-16936828)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 11412139 - 11412209
Alignment:
Q  13 catcaagctttggctcaatataccaagtgagactaaaataagtgcatgtttggaagaaagttgagatgggt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  11412139 catcaagctttggctcaatataccaagtgagactaaaataagtgcatgtttgaaagagagttgagatgggt 11412209  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 11412309 - 11412364
Alignment:
Q  153 gatgataaacaagatacaataattcgcaagagatcaaatggcagtgcatatttgtt 208  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  11412309 gatgataaacaaaatacaataattcgcaagagatcaaatggtagtgcatgtttgtt 11412364  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 11412250 - 11412292
Alignment:
Q  123 gttgtacctgaacaatagtgcactatattggatgataaacaag 165  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11412250 gttgtacctgaacaatagtgcactatattggatgataaacaag 11412292  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 29521656 - 29521608
Alignment:
Q  12 acatcaagctttggctcaatataccaagtgagactaaaataagtgcatg 60  Q
    |||||||||||| ||| |||||| |||||||||||||||||||||||||    
T  29521656 acatcaagctttagcttaatatatcaagtgagactaaaataagtgcatg 29521608  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 35545156 - 35545105
Alignment:
Q  172 taattcgcaagagatcaaatggcagtgcatatttgtttcatcatctataaca 223  Q
    ||||| ||||||||||| |||| ||||||| |||||||||||||||||||||    
T  35545156 taatttgcaagagatcagatggtagtgcatgtttgtttcatcatctataaca 35545105  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 16936783 - 16936828
Alignment:
Q  178 gcaagagatcaaatggcagtgcatatttgtttcatcatctataaca 223  Q
    ||||||||||| |||| ||||||| |||||||||||||| ||||||    
T  16936783 gcaagagatcagatggtagtgcatgtttgtttcatcatcaataaca 16936828  T

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