View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_low_27 (Length: 226)
Name: NF8861_low_27
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 53510878 - 53510703
Alignment:
| Q |
38 |
cttttaatatatcccctgcatgtagcgctcgaactaattcaggaaggtttctggagagaggaaaggacaaaattgtccagaatattgaacagagaattgc |
137 |
Q |
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| T |
53510878 |
cttttaatatatcccctgcatgtagcgctcgaactagttcaggaaggtttctggagagaggaaaggacaaaattgtccagaatattgaacagagaattgc |
53510779 |
T |
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| Q |
138 |
tgatattacctccataccagtaggtatgagttttttgtgtgatatctatgtctaccagtttgtttctcttcatctc |
213 |
Q |
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| T |
53510778 |
tgatattacctccataccagtaggtatgagttttttgtgtgatatctatgtctaccagtttgtttctcttcatctc |
53510703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 53514529 - 53514367
Alignment:
| Q |
38 |
cttttaatatatcccctgcatgt--agcgctcgaactaattcaggaaggtttctggagagaggaaaggacaaaattgtccagaatattgaacagagaatt |
135 |
Q |
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| T |
53514529 |
cttttgatatatcccctgcctgtgtagctctcgaactagttcaggaatgtttctggatagaggaaaggacaaaattgtccagaatattgaacggagaatt |
53514430 |
T |
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| Q |
136 |
gctgatattacctccataccagtaggtatgagttttttgtgtgatatctatgtctaccagtttg |
199 |
Q |
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| T |
53514429 |
gctgatattacctccgtaccaataggtatgag-tatttgtgtgatatctatgtctacctgtttg |
53514367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 53524986 - 53524859
Alignment:
| Q |
45 |
tatatcccctgcatgtagcgctcgaactaattcaggaaggtttctggagagaggaaaggacaaaattgtccagaatattgaacagagaattgctgatatt |
144 |
Q |
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| T |
53524986 |
tatatcccatgcatgtagcgttcgaactagttcaggaacatttctggagagaggaaaagacaaaattgtgcagaatgttgaacggagaattgctgatatt |
53524887 |
T |
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| Q |
145 |
acctccataccagtaggtatgagttttt |
172 |
Q |
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| T |
53524886 |
acctccataccaataggtatgagttttt |
53524859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 53548564 - 53548436
Alignment:
| Q |
44 |
atatatcccctgcatgtagcgctcgaactaattcaggaaggtttctggagagaggaaaggacaaaattgtccagaatattgaacagagaattgctgatat |
143 |
Q |
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| T |
53548564 |
atatatccccttcctgtagggttcgaactagttcaggaatgtttctgaagagaggaaaggacaaaattatccagaatattgaaaggagaattgctgattt |
53548465 |
T |
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| Q |
144 |
tacctccataccagtaggtatgagttttt |
172 |
Q |
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| T |
53548464 |
taccttcataccagtaggtatgagttttt |
53548436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 20197102 - 20197015
Alignment:
| Q |
93 |
gagaggaaaggacaaaattgtccagaatattgaacagagaattgctgatattacctccataccagtaggtatgagttttttgtgtgata |
181 |
Q |
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| T |
20197102 |
gagaggaaaggataaaattatcaagaatattgagcagagaattcctgatattatctccataccagtaggtatgag-attttgtgtgata |
20197015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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