View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_low_28 (Length: 226)
Name: NF8861_low_28
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 31941977 - 31941787
Alignment:
| Q |
30 |
tttgaatttgtttaaccgcgcgctggtaagaaagaaggacgactgaccaggcaagaagagcatgagaggagaattatcccactgtgaactggactccaac |
129 |
Q |
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| T |
31941977 |
tttgaatttgtttaaccgc----tggtaagaaagaaggactactgaccaggcaagaagagcatgagaggagaattatcccactgtgaactgcactccaac |
31941882 |
T |
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| Q |
130 |
ggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgcttggtcaaagtattccttccaaccgctccgtctctgctcctcctc |
224 |
Q |
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| T |
31941881 |
ggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgcttgctcaaagtattccttccaaccgctccgtctctgcttctcctc |
31941787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 31956167 - 31956019
Alignment:
| Q |
75 |
accaggcaagaagagcatgagaggagaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactct |
174 |
Q |
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| T |
31956167 |
accaggcaagaagagtatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtcctcttcaatcaactct |
31956068 |
T |
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| Q |
175 |
ttcgcttggtcaaagtattccttccaaccgctccgtctctgctcctcct |
223 |
Q |
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| T |
31956067 |
ttcgcttgctcaaagtattcttcccaaccgctccgtctctgcttctcct |
31956019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 31968039 - 31967904
Alignment:
| Q |
82 |
aagaagagcatgagaggagaattatcccactgtgaactggactccaacggcgaaaaccaccgcggaggtccatcgtctg---tttcgatcaactctttcg |
178 |
Q |
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| T |
31968039 |
aagaagagcataagaggagaattatccaaccgcgaaccacactccgacggcgaaaaccaccgcggaggtccaccgtcagcaactccgataaactccttcg |
31967940 |
T |
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| Q |
179 |
cttggtcaaagtattccttccaaccgctccgtctct |
214 |
Q |
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| T |
31967939 |
catgctcaaaatattccttccaaccggtccgtctct |
31967904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 49789512 - 49789548
Alignment:
| Q |
122 |
actccaacggcgaaaaccaccgcggaggtccatcgtc |
158 |
Q |
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| T |
49789512 |
actccaacggcgataaccaccgcggaggtccaccgtc |
49789548 |
T |
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