View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8861_low_9 (Length: 378)
Name: NF8861_low_9
Description: NF8861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8861_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 21623968 - 21624113
Alignment:
| Q |
18 |
attgatctgaaataaagagatggaggaagaaagtgagatgaaagaatcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagt |
117 |
Q |
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| T |
21623968 |
attgatctgaaataaagagatggaggaagaaagtgagatgaaagaatcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagt |
21624067 |
T |
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| Q |
118 |
agctataaagatgctgctattgagcttggaaatgagttggtaatgc |
163 |
Q |
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| T |
21624068 |
agctataaagatgctgctattgagcttggaaatgagttggtaatgc |
21624113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 206 - 366
Target Start/End: Original strand, 21624142 - 21624300
Alignment:
| Q |
206 |
tttctttcttaaaatttagacggggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgcatgcatgtttaaattg |
305 |
Q |
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| T |
21624142 |
tttctttcttaaaatttagaccgggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgcacgcatgtttaaattg |
21624241 |
T |
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| Q |
306 |
tatttcatctaacgtaagactctttgacgttattctttaaaacattggatcctgatgtcca |
366 |
Q |
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| T |
21624242 |
tatttcatctaa-gtaagactc-ttgacgttattctttaaaacattggatcctaatgtcca |
21624300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 40466228 - 40466130
Alignment:
| Q |
63 |
atcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaat |
161 |
Q |
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| T |
40466228 |
atcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggtaat |
40466130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 28272022 - 28271927
Alignment:
| Q |
64 |
tcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggta |
159 |
Q |
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| T |
28272022 |
tcaaagttcaagagggtttgtgtcttttgtggaagtagtcctggcaagaaaagtagttatcaagatgctgccattgaacttggaaatgaattggta |
28271927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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